Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272097g00004 ATGATGTCACTCTCTCTCTTACACTCCCCACATTCCCTAACCCTAAACCTACACCCCCATGCGCACTTTAGCCATTCCTCTCCCTATTCCATGTCCATCTTACGCCGCCTCACCCTAACCCTACGCCCTCGCCCCTCCCACAATCGCCATCGCCGCATCGCCACCACATGCGCCGCTGTCCGCCAGGACACCACCCTCTGGACCCCAGCCCCGCTCTCTGAGGTGGAACCCGCCGCTGAGTCCCTCTTCCACATATCCGTCGACATCTCCGCCGCGCCGGACCTAGTAACGTCACACACGCGCGCCGGACAGTATCTCCAGCTCCGTGTTCCCGACGCGCCCAAGCCCGTGTTCCTTGCCATCGCTTCACCGCCCAAGCTAGCATCTGCACGTGGCGCGTTTGAGTTCTTGGTGAAGAGCGTGAAGGGGTCCACTGCGGAGGCGCTGTGCGCGTTGAAGAGAGGGGATGTGGTGGAGCTCAGCCAGGTCATGGGAAACGGGTTCGATATCAGCCGGATCGACCCGCCCGCGAAATTCGGCACTGTCATCGTCTTTGCCACCGGTTCCGGAATTAGCCCGATTCGATCGCTCGTCGAGTCAGGATTTGGTGCTAGCCAGAGGTCTGATGTAAGGCTATATTATGGGGCAAGAAATCTTCAGAGAATGGCGTATCAGGATAGATTTAAGGAATGGGAATCTTCTGGTGTGAAGATTGTGCCTGTGTTATCTCAACCAGATGATAGCTGGAGTGGGGAAAGAGGCTTTGTACAGGAGGCATTTAAAAAAGCGAAGCAAATATCAAACCCTTTATCAACCGGTGCAGTACTTTGTGGTCAGAAAGAGATGGCTGAGGAAGTGACATCTATTCTAGTTGCGGATGGAGTCTCAGGTGAGAAGATATTGAAGAACTTTTGA 915 0.5486 MMSLSLLHSPHSLTLNLHPHAHFSHSSPYSMSILRRLTLTLRPRPSHNRHRRIATTCAAVRQDTTLWTPAPLSEVEPAAESLFHISVDISAAPDLVTSHTRAGQYLQLRVPDAPKPVFLAIASPPKLASARGAFEFLVKSVKGSTAEALCALKRGDVVELSQVMGNGFDISRIDPPAKFGTVIVFATGSGISPIRSLVESGFGASQRSDVRLYYGARNLQRMAYQDRFKEWESSGVKIVPVLSQPDDSWSGERGFVQEAFKKAKQISNPLSTGAVLCGQKEMAEEVTSILVADGVSGEKILKNF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272097g00004 304 Pfam Oxidoreductase NAD-binding domain 186 286 IPR001433 GO:0016491
Stsc272097g00004 304 PANTHER - 15 304 - -
Stsc272097g00004 304 CDD FNR_like 73 301 - -
Stsc272097g00004 304 PRINTS Phenol hydroxylase reductase family signature 183 202 - -
Stsc272097g00004 304 PRINTS Phenol hydroxylase reductase family signature 208 217 - -
Stsc272097g00004 304 PRINTS Phenol hydroxylase reductase family signature 100 112 - -
Stsc272097g00004 304 Gene3D - 180 304 IPR039261 -
Stsc272097g00004 304 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 175 300 IPR039261 -
Stsc272097g00004 304 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 65 170 IPR017927 GO:0016491
Stsc272097g00004 304 SUPERFAMILY Riboflavin synthase domain-like 62 168 IPR017938 -
Stsc272097g00004 304 Gene3D Translation factors 60 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272097g00004 Stsc-Chr272097 29671 31946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272097g00004 103 298 NADPH P450 reductases AT5G17770 26.190 9.51e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272097g00004 - - lang:109346377 456.447