Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272096g00012 ATGCCGAAGGTCAAGTCTAACGTCAAAGCTGCTGACAACAGGTTGAGCCGCAAGGACGTTGGAATCGGAACGAAGCAGGCGAAGAAGAAAGCTGCGCCGAAGGATCCGAACAAGCCTAAGAGGCCTCCTTCTGCATTCTTCGTTTTCATGTCTGACTTCAGAGAGGAGTATAAGAAGGAGAATCCGAACAACAAATCCGTTGCTGTTGTTGGCAAAGCTGGTGGTGCCAGGTGGAAGTCCATGTCCGATGCTGAAAAAGCTCCTTACCATGCAAAGGCTCAGAAGAACAAACTAGCATATGAGGATGATATCAGGGCCTACCACAAAGGATTGAGTGAAGGTGGAGATTCTGACAAGTCGAAATCCGAGGTGAATGACGATGATGAAGATGAAGAAGAGGAGGATGAGTGA 411 0.4818 MPKVKSNVKAADNRLSRKDVGIGTKQAKKKAAPKDPNKPKRPPSAFFVFMSDFREEYKKENPNNKSVAVVGKAGGARWKSMSDAEKAPYHAKAQKNKLAYEDDIRAYHKGLSEGGDSDKSKSEVNDDDEDEEEEDE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272096g00012 136 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 39 108 IPR009071 -
Stsc272096g00012 136 Gene3D High mobility group box domain 23 124 IPR036910 -
Stsc272096g00012 136 SUPERFAMILY HMG-box 30 113 IPR036910 -
Stsc272096g00012 136 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 134 IPR031061 -
Stsc272096g00012 136 MobiDBLite consensus disorder prediction 10 37 - -
Stsc272096g00012 136 CDD HMG-box_AtHMGB1-like 40 100 - -
Stsc272096g00012 136 MobiDBLite consensus disorder prediction 75 95 - -
Stsc272096g00012 136 Pfam HMG (high mobility group) box 39 107 IPR009071 -
Stsc272096g00012 136 MobiDBLite consensus disorder prediction 1 44 - -
Stsc272096g00012 136 SMART hmgende2 38 109 IPR009071 -
Stsc272096g00012 136 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272096g00012 Stsc-Chr272096 52278 53860 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc272096g00012 HMG_box 6.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272096g00012 K25507 - aip:107641626 204.142