Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272096g00011 ATGCCGAAGGTCAAGTCTAACGTCAAAGCTGCTGACAACAGGTTGAGCCGCAAGGACGTTGGAATCGGAACGAAGCAGGCGAAGAAGAAAGCTGCGCCGAAGGATCCGAACAAGCCTAAGAGGCCTCCTTCTGCATTCTTCGTTTTCATGTCTGACTTCAGAGAGGAGTATAAGAAGGAGAATCCGAACAACAAATCCGTTGCTGTTGTTGGCAAAGCTGGTGGTGCCAGGTGGAAGTCCATGTCCGATGCTGAAAAAGCTCCTTACCATGCAAAGGCTCAGAAGAACAAACTAGCATATGAGGATGATATCAGGGCCTACCACAAAGGATTGAGTGAAGGTGGAGATTCTGACAAGTCGAAATCCGAGGTGAATGACGATGATGAAGATGAAGAAGAGGTGATGGATAACTTTGTAATGTACTCTCAATTGTGA 435 0.469 MPKVKSNVKAADNRLSRKDVGIGTKQAKKKAAPKDPNKPKRPPSAFFVFMSDFREEYKKENPNNKSVAVVGKAGGARWKSMSDAEKAPYHAKAQKNKLAYEDDIRAYHKGLSEGGDSDKSKSEVNDDDEDEEEVMDNFVMYSQL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272096g00011 144 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 39 108 IPR009071 -
Stsc272096g00011 144 Pfam HMG (high mobility group) box 39 107 IPR009071 -
Stsc272096g00011 144 MobiDBLite consensus disorder prediction 10 37 - -
Stsc272096g00011 144 SUPERFAMILY HMG-box 30 113 IPR036910 -
Stsc272096g00011 144 CDD HMG-box_AtHMGB1-like 40 100 - -
Stsc272096g00011 144 MobiDBLite consensus disorder prediction 109 144 - -
Stsc272096g00011 144 MobiDBLite consensus disorder prediction 74 95 - -
Stsc272096g00011 144 Gene3D High mobility group box domain 23 133 IPR036910 -
Stsc272096g00011 144 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 133 IPR031061 -
Stsc272096g00011 144 MobiDBLite consensus disorder prediction 1 44 - -
Stsc272096g00011 144 SMART hmgende2 38 109 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272096g00011 Stsc-Chr272096 52278 53860 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc272096g00011 HMG_box 7.4e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272096g00011 K25507 - aip:107641626 207.994