Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272096g00008 ATGGATTCCTCACTCACCATCCTTTTAGTCTTCAACAACACCATCCAACCAGAGTTGTTCAGGAGCGTGCATGTGTATTGCAGAGAATTATTGGATGGGAACGAAAGGGAAGAAGCGGTAGTAGTTGAGAGAGAGTTTGTGCTGTCAAAGAGTGGCTCCTACGTGGAAATGAACTGCACACCAATTCTCACATCACTCAACCTTTGTGTTGCTGATGTTTGTGAAGGTTACAAGAATGGTGTGTGGCTTTGTGTCTTTGCCTTTCATGCTGATCACACACCTCAATTCAAACACATTCCTTCAATTTTGTTGTTCACCAGAAACTCAAAACTCAAGGCAATTCCCAACTTGCTTAATGATCTCCAGATTATATACAAGCTGGAATTGAAAGCAGAAGTCGATGATGATCTGCCAGATTCTGCCGAGGAAGAATCGCTGAGAAACGGCTATGGTAACCAATCACCTCAGAAAGTCTTGCCTGTCTTTGATCAGGATCTAAATTGCCTTCCTTTTGATGAAGGCACGACTGAGTTGGTCGACAAGAAGACAAATGTTGAAAGCTTACCAGGTTTTGGAGCAAAGAAAAGGAAGGCGCAAAGTGACCACATAGCGAAACTTGCTTTACCTGATTTGGTCAAGTACTTTGATGTGCCGATTGTAGAAGCATCAAGAAGTCTGAATATTGGGCTTACAGTTCTCAAGAGAAAGTGCAGAGAATTCGGTATTCCCCGCTGGCCACACAGGAAGATAAAATCACTGGACAATCTCATTCACGATCTTGAGGAAGAGGCGAAACACCAAGAATCGAAGGACAAGGTGGTGGCAATGGGGATGGTGAAGAGGCAAAGGATGTTGGAATGCGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATACAAACTGAGACCAAGAGATTCAGGCAAGATATGTTCAAGAGAAGGCACAGAGCTAGAGCTGTTGAAAAACAAAGTTCTTCAGTCTCAAGCACTTAG 996 0.4327 MDSSLTILLVFNNTIQPELFRSVHVYCRELLDGNEREEAVVVEREFVLSKSGSYVEMNCTPILTSLNLCVADVCEGYKNGVWLCVFAFHADHTPQFKHIPSILLFTRNSKLKAIPNLLNDLQIIYKLELKAEVDDDLPDSAEEESLRNGYGNQSPQKVLPVFDQDLNCLPFDEGTTELVDKKTNVESLPGFGAKKRKAQSDHIAKLALPDLVKYFDVPIVEASRSLNIGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLEEEAKHQESKDKVVAMGMVKRQRMLECEKENIEKKPFMDIQTETKRFRQDMFKRRHRARAVEKQSSSVSST 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272096g00008 331 Coils Coil 250 270 - -
Stsc272096g00008 331 ProSiteProfiles RWP-RK domain profile. 189 273 IPR003035 -
Stsc272096g00008 331 PANTHER PROTEIN RKD4 180 324 IPR044607 GO:0003700
Stsc272096g00008 331 Pfam RWP-RK domain 206 253 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272096g00008 Stsc-Chr272096 37000 39830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272096g00008 15 331 AtRKD Transcription Factor Family AT4G35590 43.235 6.82e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc272096g00008 RWP-RK 3.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272096g00008 - - gmx:100306328 421.779