Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272096g00007 ATGGGTAATTGCCTTGCTTCAATACCAACACATGAGCTACACTCTACTATCAAGAACCCTCCTCATTATTCTTCAGGTCCGTTCAGCAGTGATGATGAGAGTAAGAAGGTGGCATCATCAACTACTGATGATATAACAAGCAGCCGAGGAATTAGTCATCGGATTAACTCGGGTTCGGAGATTTCAAGTTTCGGTGGATCGATCATAACTCACAGTGGACAGATTCTTGAGACACCGAATCTAAGAGTGTTTAGTTTGGCGGAATTGAAAGTGGCAACAAAGAGCTTCAAGGCGGACTCAATGTTGGGAGAAGGTGGATTCGGAAAGGTCTACAAAGGTTGGTTGGATCATAGAACGCTTTCTCCGGTGAAAGCCGGTTCCGGCATGGTCGTCGCCGTCAAGAGACTCAACACCGAGAGCGTTCAGGGATTTCAAGAATGGAAGTCAGAAGTGAGCTTCTTAGGAAGAGTTTCACACCCAAATCTGGTTAAGCTTTTGGGTTACTGCAGAGAAGCTGATGAACTTCTCCTTGTCTATGAGTTCATGCCTAAGGGTAGCTTGGAGACTCATCTCTTTAGAAGAAATTCTAGTACAGAACCAATTTCTTGGAACACGCGTCTCAAAATAGCTATTGATGCAGCTAGAGGCTTGGCTTTCTTGCACACTTCAGAAAAGCAAGTTATATATAGAGATTTTAAGGCCTCCAATATACTATTAGATGGGGATTACAACGCAAAGATTTCGGATTTTGGATTAGCTAAATTGGGTCCTGTCGGAGGAGAATCTCATGTGAGTACCAGAATCATGGGCACCTATGGTTATGCTGCTCCAGAATACATTGCAACCGGTCATTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGACAGGGTTGAGAGCACTTGACACAAAGAGACCAACAAATCAACAGAATCTTGTTGAATGGAAGAGGCATTACCTCTCTGATAAGAAGAACATTCATAAGAACATTATGGATCCAAGAATTGAGGGTCAATACTCATTAAAAGCTGCAACACAAGCAGCTCAACTTACCCTTAATTGCCTTCAACCTGTCCCTAAGAACCGCCCTTCTATGAATGAAGTCTTCAAGTCTTTGGAAGCCATTGCTGCTATCAAACATAGAACCAAAAAGAAGTCTTCCAACAAATTAAGTTAA 1197 0.4261 MGNCLASIPTHELHSTIKNPPHYSSGPFSSDDESKKVASSTTDDITSSRGISHRINSGSEISSFGGSIITHSGQILETPNLRVFSLAELKVATKSFKADSMLGEGGFGKVYKGWLDHRTLSPVKAGSGMVVAVKRLNTESVQGFQEWKSEVSFLGRVSHPNLVKLLGYCREADELLLVYEFMPKGSLETHLFRRNSSTEPISWNTRLKIAIDAARGLAFLHTSEKQVIYRDFKASNILLDGDYNAKISDFGLAKLGPVGGESHVSTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDTKRPTNQQNLVEWKRHYLSDKKNIHKNIMDPRIEGQYSLKAATQAAQLTLNCLQPVPKNRPSMNEVFKSLEAIAAIKHRTKKKSSNKLS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272096g00007 398 PANTHER OS01G0588500 PROTEIN-RELATED 42 382 - -
Stsc272096g00007 398 SUPERFAMILY Protein kinase-like (PK-like) 69 379 IPR011009 -
Stsc272096g00007 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Stsc272096g00007 398 ProSiteProfiles Protein kinase domain profile. 96 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272096g00007 398 MobiDBLite consensus disorder prediction 15 54 - -
Stsc272096g00007 398 CDD STKc_IRAK 102 382 - -
Stsc272096g00007 398 FunFam Serine/threonine-protein kinase PBS1 182 397 - -
Stsc272096g00007 398 FunFam Serine/threonine-protein kinase BIK1 65 181 - -
Stsc272096g00007 398 Gene3D Transferase(Phosphotransferase) domain 1 182 398 - -
Stsc272096g00007 398 Gene3D Phosphorylase Kinase; domain 1 68 181 - -
Stsc272096g00007 398 Pfam Protein tyrosine and serine/threonine kinase 98 379 IPR001245 GO:0004672|GO:0006468
Stsc272096g00007 398 ProSitePatterns Protein kinases ATP-binding region signature. 102 134 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272096g00007 Stsc-Chr272096 31143 33961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272096g00007 82 379 Glycoside Hydrolase AT3G07070 49.833 1.02e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc272096g00007 PK_Tyr_Ser-Thr 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272096g00007 - - pvy:116127793 511.916