Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272096g00002 ATGGGAGGTGAAGGTGCTGTGGAGGATTCCAAGCCCAACACCACCGAAGAGGGAGGCGGTGATGGAGGAGGAGGAGTCAACATTAACATTCGATGTTCTAACGGTTCAAAGTTCTCAGTTTCAATTGGTCTTGATTCCACCGTCGTCTCTTTCAAGGAGGTTGTAGCTCGCAGTTGTGACATCCCTGCTAACCAACAGCGCCTGATTTACAAAGGTCGCATCCTCAAGGACGATCAAACTCTCCAGAGCTACGGTTTGGAGGCAGACCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTTCGGTTACCACTGGTGCGGCCAATACAACTGGTGCTAACAACACAGCTAATACGAGAGGTGCCGGTGCTACTGAGGGTGGGGGCTTAGGAGCCTCGCCGCTCCCTGGGCTAGGACTCAGTGGGATGGGGGGCAATGGCCTCAATGGCTTATTCGGGGCTGGCTTTCCGGATCTTGAACAGATGCAGCAACCATTGTTGTCAAATCCCAATATTGTGAGGGAAATAATGAACACACCTGCGATGCAGAATTTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAACTCGCACATATACTTAATGATCCAAGCACTCTTCGCCAAACACTTGAAGCTACGAGGAATCCTGAGATCATGCGTGAAATGATGAGGAATACGGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTACGAAAATGTTCAAGAACCCTTTCTAAATGCCACCACTATGACTGGTAATACAGGAAATGAACAAGTTAGAAACCAAGCAACAAATCCCTCAACTGCTAGTTCTGAGGCAAGTTCCCCCGTGCCCAATACTAACCCACTTCCCAATCCTTGGTCATCTGCTAGTGCTGGGACTGGAGGTGCCCAAAATACCACTAGAAGATCAACTACCGGTGTGGATGCTCGACAGCAACCGACCACTGGCTTAGNNNNNNNNNNAGGGGCTGGTCTGCCCGATCTTGATGGTATGTTGGGTGGCATGCCAGATGCTGCTTTACTCACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTCTCCAATCCACAGACTATGAATCAGATTCTTGGAGTTAATGCTGAGCAGCGTGGCATGCCTGATTTGAATTCTCTCAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCCTATTTTCCTCGCCAGAGATCCTGCAGCAACTTATGTCTTTCCAGCAAGCTCTCTTGTCCCAGCTTGGTCAACAACAATCAACACAGTAA 1350 0.4785 MGGEGAVEDSKPNTTEEGGGDGGGGVNINIRCSNGSKFSVSIGLDSTVVSFKEVVARSCDIPANQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSVTTGAANTTGANNTANTRGAGATEGGGLGASPLPGLGLSGMGGNGLNGLFGAGFPDLEQMQQPLLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNTGNEQVRNQATNPSTASSEASSPVPNTNPLPNPWSSASAGTGGAQNTTRRSTTGVDARQQPTTGLXXXXGAGLPDLDGMLGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPEILQQLMSFQQALLSQLGQQQSTQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272096g00002 449 MobiDBLite consensus disorder prediction 103 135 - -
Stsc272096g00002 449 CDD Ubl_Dsk2p_like 26 98 - -
Stsc272096g00002 449 ProSiteProfiles Ubiquitin domain profile. 26 95 IPR000626 GO:0005515
Stsc272096g00002 449 Gene3D - 24 109 - -
Stsc272096g00002 449 Gene3D - 193 251 - -
Stsc272096g00002 449 PANTHER UBIQUILIN 21 445 IPR015496 -
Stsc272096g00002 449 SUPERFAMILY Ubiquitin-like 17 114 IPR029071 -
Stsc272096g00002 449 MobiDBLite consensus disorder prediction 1 26 - -
Stsc272096g00002 449 Pfam Ubiquitin family 28 95 IPR000626 GO:0005515
Stsc272096g00002 449 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Stsc272096g00002 449 MobiDBLite consensus disorder prediction 269 338 - -
Stsc272096g00002 449 MobiDBLite consensus disorder prediction 103 121 - -
Stsc272096g00002 449 SMART ubq_7 26 97 IPR000626 GO:0005515
Stsc272096g00002 449 MobiDBLite consensus disorder prediction 269 358 - -
Stsc272096g00002 449 FunFam Ubiquitin domain-containing protein DSK2b 23 109 - -
Stsc272096g00002 449 SMART CBM 396 431 IPR006636 -
Stsc272096g00002 449 SMART CBM 351 393 IPR006636 -
Stsc272096g00002 449 SMART CBM 198 237 IPR006636 -
Stsc272096g00002 449 SMART CBM 144 185 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272096g00002 Stsc-Chr272096 2420 5494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272096g00002 26 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 3.12e-06 44.7