LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272096g00002	ATGGGAGGTGAAGGTGCTGTGGAGGATTCCAAGCCCAACACCACCGAAGAGGGAGGCGGTGATGGAGGAGGAGGAGTCAACATTAACATTCGATGTTCTAACGGTTCAAAGTTCTCAGTTTCAATTGGTCTTGATTCCACCGTCGTCTCTTTCAAGGAGGTTGTAGCTCGCAGTTGTGACATCCCTGCTAACCAACAGCGCCTGATTTACAAAGGTCGCATCCTCAAGGACGATCAAACTCTCCAGAGCTACGGTTTGGAGGCAGACCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTTCGGTTACCACTGGTGCGGCCAATACAACTGGTGCTAACAACACAGCTAATACGAGAGGTGCCGGTGCTACTGAGGGTGGGGGCTTAGGAGCCTCGCCGCTCCCTGGGCTAGGACTCAGTGGGATGGGGGGCAATGGCCTCAATGGCTTATTCGGGGCTGGCTTTCCGGATCTTGAACAGATGCAGCAACCATTGTTGTCAAATCCCAATATTGTGAGGGAAATAATGAACACACCTGCGATGCAGAATTTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAACTCGCACATATACTTAATGATCCAAGCACTCTTCGCCAAACACTTGAAGCTACGAGGAATCCTGAGATCATGCGTGAAATGATGAGGAATACGGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTACGAAAATGTTCAAGAACCCTTTCTAAATGCCACCACTATGACTGGTAATACAGGAAATGAACAAGTTAGAAACCAAGCAACAAATCCCTCAACTGCTAGTTCTGAGGCAAGTTCCCCCGTGCCCAATACTAACCCACTTCCCAATCCTTGGTCATCTGCTAGTGCTGGGACTGGAGGTGCCCAAAATACCACTAGAAGATCAACTACCGGTGTGGATGCTCGACAGCAACCGACCACTGGCTTAGNNNNNNNNNNAGGGGCTGGTCTGCCCGATCTTGATGGTATGTTGGGTGGCATGCCAGATGCTGCTTTACTCACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTCTCCAATCCACAGACTATGAATCAGATTCTTGGAGTTAATGCTGAGCAGCGTGGCATGCCTGATTTGAATTCTCTCAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCCTATTTTCCTCGCCAGAGATCCTGCAGCAACTTATGTCTTTCCAGCAAGCTCTCTTGTCCCAGCTTGGTCAACAACAATCAACACAGTAA	1350	0.4785	MGGEGAVEDSKPNTTEEGGGDGGGGVNINIRCSNGSKFSVSIGLDSTVVSFKEVVARSCDIPANQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSVTTGAANTTGANNTANTRGAGATEGGGLGASPLPGLGLSGMGGNGLNGLFGAGFPDLEQMQQPLLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNTGNEQVRNQATNPSTASSEASSPVPNTNPLPNPWSSASAGTGGAQNTTRRSTTGVDARQQPTTGLXXXXGAGLPDLDGMLGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPEILQQLMSFQQALLSQLGQQQSTQ	449

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272096g00002	449	MobiDBLite	consensus disorder prediction	103	135	-	-
	Stsc272096g00002	449	CDD	Ubl_Dsk2p_like	26	98	-	-
	Stsc272096g00002	449	ProSiteProfiles	Ubiquitin domain profile.	26	95	IPR000626	GO:0005515
	Stsc272096g00002	449	Gene3D	-	24	109	-	-
	Stsc272096g00002	449	Gene3D	-	193	251	-	-
	Stsc272096g00002	449	PANTHER	UBIQUILIN	21	445	IPR015496	-
	Stsc272096g00002	449	SUPERFAMILY	Ubiquitin-like	17	114	IPR029071	-
	Stsc272096g00002	449	MobiDBLite	consensus disorder prediction	1	26	-	-
	Stsc272096g00002	449	Pfam	Ubiquitin family	28	95	IPR000626	GO:0005515
	Stsc272096g00002	449	FunFam	Ubiquitin domain-containing protein DSK2b	195	251	-	-
	Stsc272096g00002	449	MobiDBLite	consensus disorder prediction	269	338	-	-
	Stsc272096g00002	449	MobiDBLite	consensus disorder prediction	103	121	-	-
	Stsc272096g00002	449	SMART	ubq_7	26	97	IPR000626	GO:0005515
	Stsc272096g00002	449	MobiDBLite	consensus disorder prediction	269	358	-	-
	Stsc272096g00002	449	FunFam	Ubiquitin domain-containing protein DSK2b	23	109	-	-
	Stsc272096g00002	449	SMART	CBM	396	431	IPR006636	-
	Stsc272096g00002	449	SMART	CBM	351	393	IPR006636	-
	Stsc272096g00002	449	SMART	CBM	198	237	IPR006636	-
	Stsc272096g00002	449	SMART	CBM	144	185	IPR006636	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272096g00002	Stsc-Chr272096	2420	5494	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272096g00002	26	95	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	30.000	3.12e-06	44.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272096g00002	K04523		-	gmx:100797539	602.053