Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272096g00001 ATGGGAGGTGAAGGTGCTGTGGAGGATTCCAAGCCCAACACCACCGAAGAGGGAGGCGGTGATGGAGGAGGAGGAGTCAACATTAACATTCGATGTTCTAACGGTTCAAAGTTCTCAGTTTCAATTGGTCTTGATTCCACCGTCGTCTCTTTCAAGGAGGTTGTAGCTCGCAGTTGTGACATCCCTGCTAACCAACAGCGCCTGATTTACAAAGGTCGCATCCTCAAGGACGATCAAACTCTCCAGAGCTACGGTTTGGAGGCAGACCACACTGTCCATTTGGTTCGTGGCTTTGCGCCTTCGGTTACCACTGGTGCGGCCAATACAACTGGTGCTAACAACACAGCTAATACGAGAGGTGCCGGTGCTACTGAGGGTGGGGGCTTAGGAGCCTCGCCGCTCCCTGGGCTAGGACTCAGTGGGATGGGGGGCAATGGCCTCAATGGCTTATTCGGGGCTGGCTTTCCGGATCTTGAACAGATGCAGCAACCATTGTTGTCAAATCCCAATATTGTGAGGGAAATAATGAACACACCTGCGATGCAGAATTTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAACTCGCACATATACTTAATGATCCAAGCACTCTTCGCCAAACACTTGAAGCTACGAGGAATCCTGAGATCATGCGTGAAATGATGAGGAATACGGACAGAGCAATGAGCAACATTGAATCCTCTCCTGAGGGATTCAACATGCTGAGGCGTATGTACGAAAATGTTCAAGAACCCTTTCTAAATGCCACCACTATGACTGGTAATACAGGAAATGAACAAGTTAGAAACCAAGCAACAAATCCCTCAACTGCTAGTTCTGAGGCAAGTTCCCCCGTGCCCAATACTAACCCACTTCCCAATCCTTGGTCATCTGCTAGTGCTGGGACTGGAGGTGCCCAAAATACCACTAGAAGATCAACTACCGGTGTGGATGCTCGACAGCAACCGACCACTGGCTTAGNNNNNNNNNNAGGGGCTGGTCTGCCCGATCTTGATGGTATGTTGGGTGGCATGCCAGATGCTGCTTTACTCACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTCTCCAATCCACAGACTATGAATCAGATTCTTGGAGTTAATGCTGAGCAGCGTGGCATGCCTGATTTGAATTCTCTCAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCCTATTTTCCTCGCCAGAGATCCTGCAGCAACTTATGTCTTTCCAGCAAGCTCTCTTGTCCCAGCTTGGTCAACAACAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCCCTGGACCGATGAACAACTTGAGTTTGGAAATGTTATCGAGTATGTTTGGCGGACTTGGAGCTGGCAGCCTAGCTGTTCCAAACAGATCAAATGAACCACCGGAGCAGCTCTATGCTACCCAACTCTCGCAGCTTCAAGAGATGGGATTTTTCGACACGCAAGAAAACATAAGGGCTCTAATTGCCACATCGGGGAATGTTCATGCAGCCGTTGAGCGTCTTTTGGGTAACTCTGGACAGTAG 1614 0.482 MGGEGAVEDSKPNTTEEGGGDGGGGVNINIRCSNGSKFSVSIGLDSTVVSFKEVVARSCDIPANQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSVTTGAANTTGANNTANTRGAGATEGGGLGASPLPGLGLSGMGGNGLNGLFGAGFPDLEQMQQPLLSNPNIVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMTGNTGNEQVRNQATNPSTASSEASSPVPNTNPLPNPWSSASAGTGGAQNTTRRSTTGVDARQQPTTGLXXXXGAGLPDLDGMLGGMPDAALLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDLNSLREVMQNPEFLRLFSSPEILQQLMSFQQALLSQLGQQQSTQEPGQTGGGPGPMNNLSLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272096g00001 537 Gene3D - 193 251 - -
Stsc272096g00001 537 MobiDBLite consensus disorder prediction 103 135 - -
Stsc272096g00001 537 SUPERFAMILY Ubiquitin-like 17 114 IPR029071 -
Stsc272096g00001 537 CDD Ubl_Dsk2p_like 26 98 - -
Stsc272096g00001 537 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 489 534 IPR015940 -
Stsc272096g00001 537 MobiDBLite consensus disorder prediction 442 465 - -
Stsc272096g00001 537 ProSiteProfiles Ubiquitin domain profile. 26 95 IPR000626 GO:0005515
Stsc272096g00001 537 MobiDBLite consensus disorder prediction 269 359 - -
Stsc272096g00001 537 PANTHER UBIQUILIN 21 532 IPR015496 -
Stsc272096g00001 537 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Stsc272096g00001 537 MobiDBLite consensus disorder prediction 1 26 - -
Stsc272096g00001 537 Gene3D - 477 537 - -
Stsc272096g00001 537 FunFam Ubiquitin domain-containing protein DSK2b 23 109 - -
Stsc272096g00001 537 Pfam UBA/TS-N domain 495 531 IPR015940 -
Stsc272096g00001 537 SUPERFAMILY UBA-like 491 533 IPR009060 GO:0005515
Stsc272096g00001 537 CDD UBA_PLICs 495 533 - -
Stsc272096g00001 537 SMART uba_6 495 533 IPR015940 -
Stsc272096g00001 537 MobiDBLite consensus disorder prediction 269 338 - -
Stsc272096g00001 537 Gene3D - 24 109 - -
Stsc272096g00001 537 MobiDBLite consensus disorder prediction 103 121 - -
Stsc272096g00001 537 Pfam Ubiquitin family 28 95 IPR000626 GO:0005515
Stsc272096g00001 537 SMART ubq_7 26 97 IPR000626 GO:0005515
Stsc272096g00001 537 FunFam Ubiquitin domain-containing protein DSK2b 478 536 - -
Stsc272096g00001 537 SMART CBM 396 431 IPR006636 -
Stsc272096g00001 537 SMART CBM 351 393 IPR006636 -
Stsc272096g00001 537 SMART CBM 198 237 IPR006636 -
Stsc272096g00001 537 SMART CBM 144 185 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272096g00001 Stsc-Chr272096 2420 6589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272096g00001 26 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.90e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272096g00001 K04523 - gmx:100797539 766.148