Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272095g00008 ATGGAATTCTACAATAACCTAGAAGACTACTCGAAGAGTTCGTCGAGCGAAGAAACAGATCAGTCGTCGTACGAGCAAATCGATCAAGACATGGGAACCGGAAGATCCTACGAGTGTGTGTTTTGCAAAAGGGGATTCACCACAGCTCAAGCTTTGGGTGGACACATGAACATTCATAGAAAAGATAGAGCAAATAACAAAGGCAAAATTCCACCTTCTAGTTCAAGCAAGGTTGATGATGAGAACTACTATGCAGATCTAGGGCACTATTCAGCACCAATTAGTCCAAGCTATCTTGCAAGAAATGGAAATTATCATCATCATCATGAGGTAGATAATAATAATAATAACAACCCTTACCATCAATTTTATTTTCCTCCATCACACACTAATTCCCATGTCCAATATAATGAGATTTTGTTTGTAGAAAACCAAAGGGAAAGTGGGAAATTGTTTGGACAAGATTGGAGGCAAAGGGGTAATAATAATTTGAGCTTGTACACTAATAATAATCCAATATGTGTACATGAGAATAATAATAGTGGCAAAATAAAAGACAAGGGTGAAGATGGTGGCCTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 612 0.3791 MEFYNNLEDYSKSSSSEETDQSSYEQIDQDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKGKIPPSSSSKVDDENYYADLGHYSAPISPSYLARNGNYHHHHEVDNNNNNNPYHQFYFPPSHTNSHVQYNEILFVENQRESGKLFGQDWRQRGNNNLSLYTNNNPICVHENNNSGKIKDKGEDGGLDLELRLGHYP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272095g00008 203 Pfam C2H2-type zinc finger 37 61 - -
Stsc272095g00008 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Stsc272095g00008 203 PANTHER OS07G0101800 PROTEIN 14 201 - -
Stsc272095g00008 203 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Stsc272095g00008 203 MobiDBLite consensus disorder prediction 59 79 - -
Stsc272095g00008 203 MobiDBLite consensus disorder prediction 1 29 - -
Stsc272095g00008 203 MobiDBLite consensus disorder prediction 7 29 - -
Stsc272095g00008 203 SUPERFAMILY beta-beta-alpha zinc fingers 35 63 IPR036236 -
Stsc272095g00008 203 Gene3D Classic Zinc Finger 10 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272095g00008 Stsc-Chr272095 67673 68454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272095g00008 37 111 C2H2 Transcription Factor Family AT5G43540 44.304 1.18e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272095g00008 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272095g00008 - - ahf:112718298 296.589