Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272095g00005 ATGGGGGTTGCAGAAAACATTGTTGTGGGTTCTCATGTTTGGGTTCCGGATCCAGAGTTAGTTTGGATTGATGGACAAGTACTAAGTATCAAGGGAAAGGAAGCTGAGATTCAACTTAGCAATGGGAATAAGGTTGCTTACAGTTTGTCAAAGTTACACCCTAAGGATGAAGATGCTCCTGCTAATGGTGTTGATGACATGACCAAGCTTGCATATTTGCATGAGCCGGGAGTGCTGTATAATCTGAAAAATAGATATGACATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCTATCAATCCCTTCAAAAGTATTGAAGACCTGTATAATGCTAGCGTCATGCAACAATACAAGGGAGCAGCAGTTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAATCAGCATATAGAGCAATGGTTAATGAGGAGAAAAGCAACTCTATTCTGTCAAACCCAGTTCTTGAAGCATTTGGTAATGCAAAGACTGTAAAAAATTCCAATTCTAGCCGTTTTGGAAAATTTGTTGAGATTCAATTTGATAAATACGGACGAATATCTGGTGCAGCCATTAGAACTTATCTGCTAGAGAGGTCACGTGTCTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTGCTTTGTGCTTCACCTCCTGAGGACAAAGAGAAATATAAGTTGGGAGACCCTAAATCATTTCACTACCTTAATCAATCCAGTTGCTACGAATTAACTGGTGTTAATGCAGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGAGGTTGTGGGAATAAATCAAGAAGAGCAGGAAGCAATCTTCAGAGTTATAGCTGCTATTCTTCATCTTGGAAACATTAACTTCACAAAATCAGAGGAAGAAATTGATTCATCAGTTCTAGAAGATGAAGGGTCCAAGTTGCATCTCCAAATAACAGCAGAACTTCTCATGTGCGATCCTAGTGCTTTGGAAGATGCACTTTGTAGGCGTGTGATGATTACTCCAGAGGAAGTTATTAAAAGAAGTCTTGATCCTCTTGGTGCAACAGTTAGCAGGGATGGTTTAGCCAAGACACTATATTCTCGTTTATTTGACTGGTACTATGTTAATGTCAAGTGTAAAACTGTGCATTCAAAGTTAGTCCAAAAAATCAATGTCTCAATTGGGCAAGACCCAGACTCAAAATGTCTTATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTAAGAATAACAGTTTTGAGCAGTTTTGTATTAATTTCACAAATGAAAAGCTGCAACAACATTTCAACCAGCATGTGTTTAAGATGGAACAAGAGAGATATACAAAAGAAGGAATTGACTGGAGCTACTTAGAATTTGTGGATAATCAAGATAAACCTGGTGGAATTATTGCTCTGCTTGATGAAGCTTGTATGTTTCCCAAGTCAACTCATGATACATTTGCAACAAAGCTTTATCAGACATTCAAAGATAACAAACGCTTCATAAAGCCAAAACTGGCACGGTCAGACTTCACTGTTGTACATTATGCAGGGGAGGTCCAGTACCAGTCTGAGCAGTTTCTTGACAAAAACAAAGATTATGTTGTTCCTGAACATCAAGACGTGCTAAGTACTTCGAGATGTTCATTTGTAACACGTCTTTTTCCTCCACTTACTGAGGAGACAGCCAAATCTGCCAAGTTTGCTTCTATTGGTTCCCGTTTTAAGCTACAATTACAACAGTTGATGGACATACTTAACCTCACAGAGCCTCACTATATTAGATGTGTGAAGCCAAACACTCTTTTACAACCTTCCATATTTGATAATACGAATGTCATCCAACAATTGCGTTCTGGCGGTGTTCTTGAAGCAGTAAGAATTAAGATTGCTGGATTCCCAACTCACAGGACTTTCCAGGAATTTCTAACTCGGTTAGGCATTCTTGCTCCAGAGGTTCTTCGTGGAAACATTGATGAAAAGGAATCATGTAAAAAGATACTAGAGAAAGCTGGCCTGACAGGTTATCAGATAGGGAAAACGCAAATATTCTTGAGAGCTGGTCAGATGGCTGAGTTAGATGCTAGGAGAACACGTTTCCTTAGCAGTTCTGCAACAGTTATCCAGAAGCACTCTAGACGTTATTGTAGACGGAAAGAATATGTTGCATTGGTCAAGTCCTCTATCTTTGTGCAATCTATTTGTAGAGGTGAACTAGCTCGGACACATTTGTATCACATGAGGAGGAGCAAGGCTGCAGTCAGAATTCAAAAGCACACACGTGGCAAACTTTCCAGAAAAAGATACATAGAAATAAAGATTGCAGCTATATTTTTGCAGGAAGCCTTTCGAGCAATGGATGCTCGGGATAAATTAAATAAATTAAAATATAGGAAGAAAAATTCTGCAGCAATCACTATTCAGTCATATTATCGCCGACATAGAGCTCTCTCAGAGTACAAGATCCTTAAATCAGCAATCATTTCACAAAGTGTCAATGATTCCACGGAAAAAGATGAAGACAAGGGTTTGGGGAATATAGTGGATAATGAAAGTGTTTCAATTGAAGCCGTTTCAAATGTTCTCCAAGAAGAACCCTCAAACACTTTTCAAGAAGAACCTTCAAATGCTACCCAAGAAGAACCCTCAAGTACTATTGAAGAAGAACTGTTAAATGCCATCCAAGAAGAACTCACAGTTACTTCCGAACATGTTGAAAGAACTGAAGCTATCAGGGAATCCCATAGTCCTTTACAAGGAAGTGGAGTTGAAGCTCTGACTGAAGAAATAAAAAGCTTGAAGGCCATGTTGCAGGCAGAAAAAGTAAGAGCAGACGAATGTGAAAGGAAATATGTAGAAGCTCAAGGATCCAGCGAAGAGTTACGGAAAAAGTTAGAAGAAACTGAAAAAAGGGTTGTTCAACTTCAGGAGTCATTGAACAGTGTGTATCAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGATTTGAAGAGCATCTTAAGTACTTCATCAAGATTGAGTTCAACATTTCGACCTATTGCTAG 3048 0.3888 MGVAENIVVGSHVWVPDPELVWIDGQVLSIKGKEAEIQLSNGNKVAYSLSKLHPKDEDAPANGVDDMTKLAYLHEPGVLYNLKNRYDINEIYTYTGNILIAINPFKSIEDLYNASVMQQYKGAAVGDLSPHVFAIAESAYRAMVNEEKSNSILSNPVLEAFGNAKTVKNSNSSRFGKFVEIQFDKYGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCASPPEDKEKYKLGDPKSFHYLNQSSCYELTGVNAAQEYLSTKRAMEVVGINQEEQEAIFRVIAAILHLGNINFTKSEEEIDSSVLEDEGSKLHLQITAELLMCDPSALEDALCRRVMITPEEVIKRSLDPLGATVSRDGLAKTLYSRLFDWYYVNVKCKTVHSKLVQKINVSIGQDPDSKCLIGVLDIYGFESFKNNSFEQFCINFTNEKLQQHFNQHVFKMEQERYTKEGIDWSYLEFVDNQDKPGGIIALLDEACMFPKSTHDTFATKLYQTFKDNKRFIKPKLARSDFTVVHYAGEVQYQSEQFLDKNKDYVVPEHQDVLSTSRCSFVTRLFPPLTEETAKSAKFASIGSRFKLQLQQLMDILNLTEPHYIRCVKPNTLLQPSIFDNTNVIQQLRSGGVLEAVRIKIAGFPTHRTFQEFLTRLGILAPEVLRGNIDEKESCKKILEKAGLTGYQIGKTQIFLRAGQMAELDARRTRFLSSSATVIQKHSRRYCRRKEYVALVKSSIFVQSICRGELARTHLYHMRRSKAAVRIQKHTRGKLSRKRYIEIKIAAIFLQEAFRAMDARDKLNKLKYRKKNSAAITIQSYYRRHRALSEYKILKSAIISQSVNDSTEKDEDKGLGNIVDNESVSIEAVSNVLQEEPSNTFQEEPSNATQEEPSSTIEEELLNAIQEELTVTSEHVERTEAIRESHSPLQGSGVEALTEEIKSLKAMLQAEKVRADECERKYVEAQGSSEELRKKLEETEKRVVQLQESLNSVYQDDIFHVKSSCRFEEHLKYFIKIEFNISTYC 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272095g00005 1015 Gene3D Kinesin motor domain 154 256 IPR036961 -
Stsc272095g00005 1015 ProSiteProfiles IQ motif profile. 725 754 IPR000048 GO:0005515
Stsc272095g00005 1015 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Stsc272095g00005 1015 Gene3D - 634 700 - -
Stsc272095g00005 1015 MobiDBLite consensus disorder prediction 865 886 - -
Stsc272095g00005 1015 ProSiteProfiles IQ motif profile. 773 802 IPR000048 GO:0005515
Stsc272095g00005 1015 Gene3D - 420 556 - -
Stsc272095g00005 1015 PANTHER MYOSIN 154 750 - -
Stsc272095g00005 1015 Pfam IQ calmodulin-binding motif 752 770 IPR000048 GO:0005515
Stsc272095g00005 1015 Pfam IQ calmodulin-binding motif 803 822 IPR000048 GO:0005515
Stsc272095g00005 1015 Gene3D - 702 752 - -
Stsc272095g00005 1015 Gene3D - 753 799 - -
Stsc272095g00005 1015 Pfam Myosin head (motor domain) 64 153 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 Pfam Myosin head (motor domain) 154 687 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 Gene3D Kinesin motor domain 561 633 IPR036961 -
Stsc272095g00005 1015 Gene3D Kinesin motor domain 12 153 IPR036961 -
Stsc272095g00005 1015 CDD MYSc_Myo11 76 687 IPR036018 -
Stsc272095g00005 1015 FunFam Myosin heavy chain 212 267 - -
Stsc272095g00005 1015 Gene3D Myosin VI head, motor domain, U50 subdomain 272 419 - -
Stsc272095g00005 1015 SMART MYSc_2a 56 700 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 ProSiteProfiles Myosin motor domain profile. 62 699 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 SMART iq_5 701 723 IPR000048 GO:0005515
Stsc272095g00005 1015 SMART iq_5 749 771 IPR000048 GO:0005515
Stsc272095g00005 1015 SMART iq_5 724 746 IPR000048 GO:0005515
Stsc272095g00005 1015 SMART iq_5 800 822 IPR000048 GO:0005515
Stsc272095g00005 1015 SMART iq_5 772 794 IPR000048 GO:0005515
Stsc272095g00005 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 828 IPR027417 -
Stsc272095g00005 1015 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 PRINTS Myosin heavy chain signature 403 431 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 Pfam Myosin N-terminal SH3-like domain 10 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc272095g00005 1015 Coils Coil 924 986 - -
Stsc272095g00005 1015 ProSiteProfiles IQ motif profile. 750 774 IPR000048 GO:0005515
Stsc272095g00005 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 750 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272095g00005 Stsc-Chr272095 29338 44024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272095g00005 1 983 Myosins gene family AT1G54560 58.270 0.0 1225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272095g00005 K10357 - gmx:100803485 1415.59