Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272094g00003 ATGTTCGGACCTCCAGGAACTGGGAAGACACTTCTTGCTAAAGCAGTTGCCACTGAATGTGGAACCACTTTCTTTAATGTTTCTTCCGCTACTTTAGCTTCTAAATGGCGTGGTGAGAGTGAACGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGACTCTCTGTGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCTTGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTCGAGGTGGCCGCCGATGTCAATATTGATGATGTGGCTCGCCGGACGGAAGGCTATAGTGGAGATGATTTGACAAACGTATGCCGCGATGCTTCCTTGAATGGTATGAGGCGAAAGATAGCAGGAAAGACGCGTGATGAGATAAAGAACATGCCCAAGGATGAGATTTCAAAGGATCCTGTTGCTATGTGTGATTTTGAAGAAGCTCTGAAGAAAGTCCAAAGAAGTGTTTCTCAGGCTGATATTGAACGGCATGAAAAGTGGTTTAATGAATTTGGATCAGCCTAA 744 0.4341 MFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPVAMCDFEEALKKVQRSVSQADIERHEKWFNEFGSA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272094g00003 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 244 IPR027417 -
Stsc272094g00003 247 ProSitePatterns AAA-protein family signature. 108 127 IPR003960 GO:0005524|GO:0016887
Stsc272094g00003 247 Gene3D - 137 223 - -
Stsc272094g00003 247 PANTHER AAA DOMAIN-CONTAINING 1 246 - -
Stsc272094g00003 247 FunFam Katanin p60 ATPase-containing subunit A1 1 149 - -
Stsc272094g00003 247 Gene3D - 1 238 IPR027417 -
Stsc272094g00003 247 SMART AAA_5 1 138 IPR003593 GO:0016887
Stsc272094g00003 247 FunFam Katanin p60 ATPase-containing subunit A1 137 223 - -
Stsc272094g00003 247 Pfam AAA+ lid domain 158 199 IPR041569 -
Stsc272094g00003 247 Pfam ATPase family associated with various cellular activities (AAA) 2 136 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272094g00003 Stsc-Chr272094 9158 12015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272094g00003 1 239 Calmodulin-binding Proteins AT3G56690 39.754 1.56e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272094g00003 K07767 - rcu:8271350 482.256