Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272093g00004 ATGGACGATCAAATTCAGATGCTGGCTGAAAAACTCAACCAAATTGTTCTAGAGTACAAGCAGTCACCGCCAATTTCACGCACAGAGGATGCGCCAAAGCAAGAGAACGAAAACTCTGAGTGCGCGGACATTGAAAACAGCATGACTAATGAGATCCATCAAGTTTCACCTGATCAGGGTAGTCACACACTTCCGATCTTGAAGAAAATCATCCATTTGAGTACCAAGATTCAGGATTTGAAGCAACAGCATATAGCACTGGCTGAAGAAGCAAAACTGTCTACCAAGTCCTTTCTGGAGTCTGATGTTTTGGAGTCTTTTAAGTCTCTAGGTACTGAATATGAACTCCTGAAGAAAAAGTTTCTAAAGGAGTTCAATGAACGGAAGAGGCTTTCAAATGAATTGATTGAAATAAAGGGAAACATCAGAGTTTTCTGCAGATGCAGGCCTTTGAATGCAAGTGAAATTGCAAATGGGTCTGCATCTGTACTGAATTTTGAGGCATCTTCTGATGAGGAACTTCAAGTCATCTCCTCAGACACTACCAAGAAGCAATTTAAATTTGATCATGTCTTTAAGCCAGAAGATAGCCAAGAGGCAGTATTTGCACAGACGAAGCCTATCGTTGCATCAGTGTTGGATGGATTCAATGTCTGTATATTTGCATATGGGCAAACTGGAACTGGTAAAACGTTTACAATGGAAGGAACACCAGAGCAGAGGGGAGTTAACTACAGAACGCTGGAGGAACTATTTAGGATCACTGAGGAGAGACATGGTGTAATGAAGTATGAATTGTGTGTCAGCATGTTGGAAGTTTACAATGAGAAGATAAGAGATCTCCTAGTGGAAAATTCCTCCCAAACTAAGAAGTTGGAGGTAAAGCAATCTGCAGAGGGAACCCAAGAAGTCCCAGGACTTGTTGAAGCTCCTGTTTATGGAACAGAAGATGTTTGGGAATTGCTCAAGACAGGAAATAGAGTAAGATCTGTTGGATCCACCTGTGCTAATGAGCTCAGCAGCCGTTCTCATTGCTTGTTGCGAGTAACTGTTATGGGGGAGAATTTAGTTAATGGCCATAGAACAAGGAGCCACCTCTGGCTAGTAGACCTAGCTGGCAGTGAGCGTGTAGGGAAAACAGAAGCTGAAGGAGAAAGACTTAAGGAATCTCAATTCATAAATAAGTCCCTATCTGCTCTTGGTGACGTTATTTCGGCTCTTGCCTCCAAATCGGCACATATACCTTACAGGAACTCAAAGCTGACTCATATACTTCAGAGCTCCTTAGGAGGAGATTGCAAAACATTAATGTTTGTCCAGGTTAGCCCAAGTGAGACAGATTTGGGAGAGACGCTTTGTTCTCTAAATTTTGCTAGCCGTGTCCGTGGAATTGAGAGTGGCCCAGCTCGCAAGCAAGTGGACCACGCTGAGCTGCTTAAATATAAGCAAATGGTAGAGAAACTCAAACATGATGAGAAGGAAACTAAGAAGCTACAAGATAACAATGCAAACTTGCAGCTGAGGCTTGCCTCAAGAGAACACCAATGTAAAACCCTTCAGGAAAAGATTAGGAGCCTTGAGAATCAGATAGCTGAAGAAAGAAAAACCAGGCTAAAGCAAGAGAGTAGATCACTTGCTGCTGTTTCAGCACAAAATACGTCTTCAACATCAACTGCAGCTCGGAGAACCACTGCAGATAAAAAGCCACCTCTGAATCCTTCAAAGACGAGGATGCCATTGAGAAGAATCTCCAATTTCATGCCTTCACGATCTCCTACAGCATCGAAGAGATACAACACTTCCATGAATAGTGGGAAGGAAAACACTGCCTCAACCACTACAAATAGAGAATCCTACTCAAAACCAAGTAGGGCATCAATTGCAGGAGTTAGACCACTTGCAATACCAACAGGGAAGCTCCTTCAACCAAGAAGGCGCGTCTCTGTTGCCACAATCCGTCCAGAGACAACTTCTGACATCACAACTCCACTCCGGACTCAGGCGCCACTGACAGCGCAGTTGCTGCAACCAAGGAGGCGGGTCTCCAGTGTCATAATCCGTCCAGAGACAAGTTCTGAAATTACAACTCCACTCCGTGCATCTCAATTTGCAGGTGGAAGCAGTGTATTAATGAGTCGCCAAAGGAGAGCTCGGTATTCAAATTTGTTTGCCCCATTACCAGAGACAAGAGCATCTGTTGATATGTCCACACCAATGTCTATTAGGAGTAGCAGCAAGTTTAGAGGAAGTCCAATTAATCCAGCTGCGGTTGCACTGCAACGGAAACCTGTGATCTGGAGCCCTCTCAAACTGAGAAGCTTGAAAAATAACAATAACAGAAGGTCTTTGCTCTTGCCATCTCGGTCATACAATGAGTTGCAATGA 2385 0.4369 MDDQIQMLAEKLNQIVLEYKQSPPISRTEDAPKQENENSECADIENSMTNEIHQVSPDQGSHTLPILKKIIHLSTKIQDLKQQHIALAEEAKLSTKSFLESDVLESFKSLGTEYELLKKKFLKEFNERKRLSNELIEIKGNIRVFCRCRPLNASEIANGSASVLNFEASSDEELQVISSDTTKKQFKFDHVFKPEDSQEAVFAQTKPIVASVLDGFNVCIFAYGQTGTGKTFTMEGTPEQRGVNYRTLEELFRITEERHGVMKYELCVSMLEVYNEKIRDLLVENSSQTKKLEVKQSAEGTQEVPGLVEAPVYGTEDVWELLKTGNRVRSVGSTCANELSSRSHCLLRVTVMGENLVNGHRTRSHLWLVDLAGSERVGKTEAEGERLKESQFINKSLSALGDVISALASKSAHIPYRNSKLTHILQSSLGGDCKTLMFVQVSPSETDLGETLCSLNFASRVRGIESGPARKQVDHAELLKYKQMVEKLKHDEKETKKLQDNNANLQLRLASREHQCKTLQEKIRSLENQIAEERKTRLKQESRSLAAVSAQNTSSTSTAARRTTADKKPPLNPSKTRMPLRRISNFMPSRSPTASKRYNTSMNSGKENTASTTTNRESYSKPSRASIAGVRPLAIPTGKLLQPRRRVSVATIRPETTSDITTPLRTQAPLTAQLLQPRRRVSSVIIRPETSSEITTPLRASQFAGGSSVLMSRQRRARYSNLFAPLPETRASVDMSTPMSIRSSSKFRGSPINPAAVALQRKPVIWSPLKLRSLKNNNNRRSLLLPSRSYNELQ 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272093g00004 794 Pfam Kinesin motor domain 147 464 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 FunFam Kinesin-like protein 136 504 - -
Stsc272093g00004 794 MobiDBLite consensus disorder prediction 535 625 - -
Stsc272093g00004 794 CDD KISc_C_terminal 139 465 - -
Stsc272093g00004 794 PRINTS Kinesin heavy chain signature 215 236 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 PRINTS Kinesin heavy chain signature 334 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 PRINTS Kinesin heavy chain signature 365 383 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 PRINTS Kinesin heavy chain signature 414 435 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 498 IPR027417 -
Stsc272093g00004 794 Coils Coil 481 543 - -
Stsc272093g00004 794 ProSiteProfiles Kinesin motor domain profile. 141 464 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 SMART kinesin_4 139 472 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc272093g00004 794 MobiDBLite consensus disorder prediction 542 563 - -
Stsc272093g00004 794 PANTHER KINESIN-LIKE PROTEIN KLP-3 65 599 IPR027640 GO:0003777|GO:0007018
Stsc272093g00004 794 MobiDBLite consensus disorder prediction 586 622 - -
Stsc272093g00004 794 ProSitePatterns Kinesin motor domain signature. 364 375 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc272093g00004 794 Gene3D Kinesin motor domain 136 510 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272093g00004 Stsc-Chr272093 7389 12167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272093g00004 128 489 Calmodulin-binding Proteins AT5G65930 43.164 1.48e-81 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272093g00004 K10406 - gmx:100788477 1010.36