Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272091g00011 ATGGAGGGAACTGGTCCTAGTGGTTGTAGTGGAGAGGACTTTGAACAGGACGTGGAAACGTCGGTGCCCGTGGCCGTACGGCGCGCGCTAGAGCTGCTGGAGAAGGACGACGCCGACCTGAGGGTTCAGGCCGCCTGCGACATCCGCCGCCTCACGAAGAGATCACGGTGCTGCCGTCGACAGCTCCGTCACGCCGTCCGCCCGCTCGTCTCAATGCTCCGAGTTGAGTCGTCCGAGTCACGCGAGTCCGCCCTTCTCGCCTTGCTTAATCTTGCCGTCAAAGATGAAAAGAACAAAATTAGCATTGTGGAAGCAGGTGCATTAGAGCCTATAGTAAGTTTCCTACAGTCACAAAATCCAAACATGCAAGAATATGCAAGTGCATCATTGCTCACTCTCTCTGCCTCCGCAACCAACAAACCAATTATCACTTCTTCTGGTGCCATTCCACTTCTAGTAAAGATTCTAAGAGATGGAACACCACAAGCTAAAGCTGATTCACTAATGGCCCTCTCCAATTTATCAACACACTCCGATAACCTCAGAATCATCCTTGAAACCAATCCGGTTGCTTCAATAATCCACCTTCTCAAGACATGCAAGAAATCGTCGAAAACAGCTGAGAAATGCTGTGCTTTGATAGAGTCATTGGTTGGTTATGACAAGTGCCGGACTGCGCTAACATCCGAAGAAGGCGGGGTTCTGGCGATTGTTGAAGTTCTTGAGAGTGGAACAAAGCAGGGGAAGGAACATGCTGTTGGAGCATTATTGAAAATATGCCAGAGTGATAGGTGTAAATACAGAGAACCAATCCTAAGGGAAGGTGTTATTCCTGGACTTCTTGAACTCACAGTTCAAGGGACAGAGAAGTCTCAGCAAAAAGCACATACACTTTTGCAATTACTTAGAGAATCACCTAATCCAAGATCAGAAACTGAACCTGACACAATAGAGAACATAGTTTGCAACATTATATCGCAAATTGATGGGAAAGATGACCAAGCTGATGGTAAAGCTAAGAAGATGTTGGCTGAGATGGTCCAAGTCAGCATGGAACGAAGTTTGACACACTTGCAACAGAGAGCAGCACTTGTATGCAACCCAAGTGATTTGTCTATTGCTAGTTGTGCTTCTCATGTTTCTTTAAATTTGTAG 1155 0.4675 MEGTGPSGCSGEDFEQDVETSVPVAVRRALELLEKDDADLRVQAACDIRRLTKRSRCCRRQLRHAVRPLVSMLRVESSESRESALLALLNLAVKDEKNKISIVEAGALEPIVSFLQSQNPNMQEYASASLLTLSASATNKPIITSSGAIPLLVKILRDGTPQAKADSLMALSNLSTHSDNLRIILETNPVASIIHLLKTCKKSSKTAEKCCALIESLVGYDKCRTALTSEEGGVLAIVEVLESGTKQGKEHAVGALLKICQSDRCKYREPILREGVIPGLLELTVQGTEKSQQKAHTLLQLLRESPNPRSETEPDTIENIVCNIISQIDGKDDQADGKAKKMLAEMVQVSMERSLTHLQQRAALVCNPSDLSIASCASHVSLNL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272091g00011 384 PANTHER U BOX DOMAIN-CONTAINING 25 307 - -
Stsc272091g00011 384 SMART arm_5 136 176 IPR000225 GO:0005515
Stsc272091g00011 384 SMART arm_5 95 135 IPR000225 GO:0005515
Stsc272091g00011 384 SMART arm_5 54 93 IPR000225 GO:0005515
Stsc272091g00011 384 SMART arm_5 177 219 IPR000225 GO:0005515
Stsc272091g00011 384 FunFam U-box domain-containing protein 4 11 364 - -
Stsc272091g00011 384 Pfam Armadillo/beta-catenin-like repeat 96 130 IPR000225 GO:0005515
Stsc272091g00011 384 Gene3D - 14 370 IPR011989 -
Stsc272091g00011 384 SUPERFAMILY ARM repeat 28 320 IPR016024 -
Stsc272091g00011 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 106 148 IPR000225 GO:0005515
Stsc272091g00011 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 189 IPR000225 GO:0005515
Stsc272091g00011 384 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 64 106 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272091g00011 Stsc-Chr272091 58414 61810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272091g00011 22 303 U-box Gene Family AT2G23140 34.155 3.58e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272091g00011 - - aip:107606755 525.783