Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272091g00005 ATGTCGTCGCATTGGTGTTACAGGTGCAACAAATTTGTGAGGGTATGGAGGCAGGACATTGTGATTTGTCCAGAATGCGATAGCGGTTTCCTTGAAGAGGTAGATCCTAACGCACGCACCGTTCACGCCGATGGGAACCGCGCACGACGGTTGCCAGCGGCAGCCATGTACATGATAGGCCACCATCAGCGTCATCAACGCCATAATTCCTTTGACAGTAACGCCGTCGCCACCACCGCAAACGATAACAGTAATAATAATAACATCAATGTCAGTTTGTCGCGGCAAAATCAACGGCGTCACTGCCGGAACGCAAACGGCGGTGGCGGAGGAACAGGAGGTGACAGGTCGCCGATTAATCCAGTCATCATGCTCCACGGCGGAGAGCAATCCGAGGGAACCAGCAGGCGCAGGGGGTTCGAGCTCTTTTATGACGATGGAGCCGGTGCCGGCCTCCGCCCCTTGCCGCCGAGCATGTCGGAGTTTCTTCTCGGAACAGGATTCGATAGGGTTTTGGAGCAGTTCTCACATTTTGAAAGACACGATCGGCACCTCCACCAGCACAACCAGCAACCTCCTCCGGCATCAAAAACCGCCGTAGAAGGCTTACCGGAGGTGGAGATCAACGAGAACAACCTCGCCGCAGAGCCACATTGCGCAGTTTGCAAGGAAGCCTTCGAGATCGGAGCCAAAGCTAAAGAAATGCCGTGCAAACACATATATCACTCGGAATGCATCCTACCGTGGCTCGCCCTTCGAAACTCGTGCCCGGTTTGCCGCCACGAGTTGCCCACGGAAGAAAACAATAACGGTCACGTGCAGAACACTGCCAGCAACGACAGCGCACGTGCGGACCAAGAAGGTAATAATAATAACAACAGCAATAACAGTAATGATAACAGAAACAATAACAGCAACAATGTGGGGCTAACAATATGGCGGTTACCGGGTGGCGGTTTCGCGGTTGGGAGGTTAACAGGCGGTGGTGCAGGAAGAGGAGGATCGACAGAGAGGGAAAATCTTCTTCCCGCTGTGTACACAGAAATGGATGGAGGAGGGTTTGATGGTAATAACAACAACAATAATAATAATGGTGGTGGTGAGAGGAGGAGGGTTACTTGGACAGTTTCAACTACTACTTCAAGAGAGAGAGAAAGTGGTGGTGGGTTGAGGAGAATGATGAACAGTTTCTTTGGTTGCTTCAGACGTGGGAATAATGGTGTGATTCATCATCATCATCATCTTCATCACTCTTCTTCATCTTCTTCTTCTCCTTCTTCTCGGCATGGTGATTATTTTAGGCAGTATTCATCATCATCACCTTCAAGTAATAGAAATAGAGCTATGAGTAGTGGCACATCACGTTCCGCTGTCAATTTCGAATTGGATCGTTCTCCATTACGTCAACGCAGGACTTGGTCTATGGATGTAAACAATGGCGGTTCCAGAGCTGCTTGGTGA 1461 0.5017 MSSHWCYRCNKFVRVWRQDIVICPECDSGFLEEVDPNARTVHADGNRARRLPAAAMYMIGHHQRHQRHNSFDSNAVATTANDNSNNNNINVSLSRQNQRRHCRNANGGGGGTGGDRSPINPVIMLHGGEQSEGTSRRRGFELFYDDGAGAGLRPLPPSMSEFLLGTGFDRVLEQFSHFERHDRHLHQHNQQPPPASKTAVEGLPEVEINENNLAAEPHCAVCKEAFEIGAKAKEMPCKHIYHSECILPWLALRNSCPVCRHELPTEENNNGHVQNTASNDSARADQEGNNNNNSNNSNDNRNNNSNNVGLTIWRLPGGGFAVGRLTGGGAGRGGSTERENLLPAVYTEMDGGGFDGNNNNNNNNGGGERRRVTWTVSTTTSRERESGGGLRRMMNSFFGCFRRGNNGVIHHHHHLHHSSSSSSSPSSRHGDYFRQYSSSSPSSNRNRAMSSGTSRSAVNFELDRSPLRQRRTWSMDVNNGGSRAAW 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272091g00005 486 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Stsc272091g00005 486 MobiDBLite consensus disorder prediction 268 310 - -
Stsc272091g00005 486 MobiDBLite consensus disorder prediction 350 388 - -
Stsc272091g00005 486 SMART ring_2 219 259 IPR001841 -
Stsc272091g00005 486 MobiDBLite consensus disorder prediction 419 460 - -
Stsc272091g00005 486 FunFam E3 ubiquitin-protein ligase RING1-like 182 266 - -
Stsc272091g00005 486 SUPERFAMILY RING/U-box 200 266 - -
Stsc272091g00005 486 MobiDBLite consensus disorder prediction 412 463 - -
Stsc272091g00005 486 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Stsc272091g00005 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 266 IPR013083 -
Stsc272091g00005 486 MobiDBLite consensus disorder prediction 353 384 - -
Stsc272091g00005 486 Pfam Protein of unknown function (DUF1117) 308 437 IPR010543 -
Stsc272091g00005 486 MobiDBLite consensus disorder prediction 264 310 - -
Stsc272091g00005 486 Pfam Ring finger domain 218 260 IPR001841 -
Stsc272091g00005 486 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272091g00005 Stsc-Chr272091 11977 13437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272091g00005 193 267 C3H Transcription Factor Family AT5G15820 55.263 1.90e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272091g00005 K11982 - gmx:100784364 343.584