Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272090g00019 GGTGGTGGTGGTTTATTAAATGGGAATGTCAGTTCAGTGCTAGCTGGGATGGGTTCAGCCGTGGTTGTGCTGCTAATATACCGTTGCATGTCCATGTTCTTGTGCATCCGCAATAATAATCAGATGAACCCAAGCATAGAGGAGGTGGCGGAATCTAGCAGTTTGAATAATTGGGTGTCGCATATGATCCCATCCCACAAGTACGAGAAGAAGAACGATGATGAGGATTGCACATGTGCAGTGTGCTTGGGAGAGTTGGAGGAGGGTGAGGAGGTGAGGAGTATGCCAGAGTGCATGCACTCTTTCCATGTCCCATGCATTGATATGTGGCTCCGTTCCCATTCAAGTTGCCCCCTTTGCCGTGCTGATGCCACACCTTCTTCCGCCAATAACAATCAACATCACACCACCATTCATATGGATTTCATGCAACATATTCTTCTCCAGCAACCTCCCCATGCACCCTCGCTTTGA 474 0.4852 GGGGLLNGNVSSVLAGMGSAVVVLLIYRCMSMFLCIRNNNQMNPSIEEVAESSSLNNWVSHMIPSHKYEKKNDDEDCTCAVCLGELEEGEEVRSMPECMHSFHVPCIDMWLRSHSSCPLCRADATPSSANNNQHHTTIHMDFMQHILLQQPPHAPSL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272090g00019 157 Pfam Ring finger domain 78 121 IPR001841 -
Stsc272090g00019 157 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 125 IPR044675 -
Stsc272090g00019 157 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Stsc272090g00019 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 127 IPR013083 -
Stsc272090g00019 157 SUPERFAMILY RING/U-box 63 131 - -
Stsc272090g00019 157 SMART ring_2 79 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272090g00019 Stsc-Chr272090 64460 65006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272090g00019 63 129 C3H Transcription Factor Family AT3G03550 54.412 4.27e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272090g00019 - - ahf:112782505 198.364