Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272090g00017 ATGGAGTCTGGTGAGAGTGGGGGTTCCTCGGTTCGAGAGGTGCGTGCAAATGGAAACAGCATTAAAACATCAGAAGTTGAGGCTAAGCTTGATGAAGGGAATATTCAAGAAGCAGAGTCAGCATTGCGAGAAGGCTTGTCTCTCAATTTTGAGGAGGCAAGAGCTCTTCTTGGAAAGCTAGAGTATCAACGAGGTAATGTCGAAGGGGCTCTTCGTGTGTTTGATGGGATTGATCTTCAAGCAGCAATACAGCGACTGCAATCTTCCCTTTCTGATAAACCAGCCAAGAAAGGAGGTGGCTCATCTTCCACGTCCTCACAGCATGCTGCTAGTTTGGTGCTCGAAGCCATCTTCTTAAAATCCAAGTCTCTACAAAAGCTGGGAAAGTTTACTGATGCTGCTAGCGAGTGCAAGCGTGTGCTTGATGCTGTTGAGAAGATGTTTTCTCAGGGTATACCCGATGCTCAAGTGGACAATAAATTGCAAGAGATAGTTAGCCATGCCGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCCGGTTGCTATCCCGAGGCAATATCTGCATATAGGAATGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGCATTTGCTATGTTTTTGCTGTATAGTGGGGTGGAGGCAAATCCACCCAGTTTGGCAGTTCAGACTGAAGGCTCATATGTACCTAAAAATAATCTGGAAGAGGCAATTCTGCTTCTAATGATTCTTGTGAGAAAGTTTTGTCTTGGTAAGACAAAATGGGACCCCTCAGTAATGGAACACCTGACATTTGCACTTTCAGTATGTGGCCAAACCTCTGTTTTAGCAAAACAATTTGAAGAGTTGATTCCTGGTGTATATCATCGTATTGACCGTTGGAATTCATTAGCACTGTGTCTCAGTGCAGCTGGACAAAACAAATCTGCACTGGATCTGCTAAGAAAGTCTCTGCACCGACATGAACGACCAAATGACATGATAGCATTGTTATTGGCTGCTAGAATTTGCAATGAGGATCCTCATCTTGCTGCAGAAGGTGCAGGCTATGCACAGAGGGCAGTCAATAATGCTAAGGGTCTAGACGAGCATTTAAAAGGTGTAAGCCTTCGGATGTTGGGACTTTGCCTGGGAAAGCAAGCTAAGGTTGCTTCCTCTGACTACGAGAGGTCTCATCTTCAGGCCAAAGCTCTTCAATCATTGGACGAGGCAGCTAGATTGGAGCAAAAGAATTCTGATATAATTTTTGAGTTAGCTGTTCAATATGCAGAGCACCGGAATCTGTCAGCAGCTTTGCACTATGCAAATATGTTCTATCATGAAACTGGTGGATCTGTATTGAAAGGATGGAGATTGCTTGCTCTAGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAATGGTGACTGATGCTGCTTTAGATGCGACTGCAAAATGGGAGCAAGGTCCACTTCTCAGGTTTAAAGCAAAGCTGAAGATCTCCCAATCACGACCCATGGATGCTATTGAAACTTACAGACTCCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGACCTCTCAGAATTAGTTCACAGGTGGATGACAAGGTAGACGAATTCGATGTCTGGCATGGCCTCGCAAATTTATATGCAAGTCTTTCTCACTGGAAGGATGCGGAAATATGTTTGCAAAAGGCCAGAGAGTTAAAGGAGCACTCAGCTGCTACCGCGCACACTGAAGGTGTTATGTTAGACGGCCGCGGACAAGATCAAGAAGCTCTAGCCACCGCAACAAATGCCACACTACTTGAATCAAGCCATGTTCCAAGCAAGATATTGATGGGTGCTTTGATGATGAAAATGGGTCCGAAAGCTTTGCCTGCCGCTAGAAGTCTGCTTACCGATGCACTCAGAGTCGAACCAACAAATCGCATGGCTTGGTATCACTTGGGACTGACACACAAGTCTGACGGCCGAATGGCCGACGCTGCTGATTGCTTCCAGGCAGCCTTCATGCTTGAAGAAACAGATCCCATTGAAAGTTTCAGCACTATGCTCTGA 2070 0.4527 MESGESGGSSVREVRANGNSIKTSEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSLSDKPAKKGGGSSSTSSQHAASLVLEAIFLKSKSLQKLGKFTDAASECKRVLDAVEKMFSQGIPDAQVDNKLQEIVSHAVELLPELWKQAGCYPEAISAYRNALLSQWNLDNDCCARIQKAFAMFLLYSGVEANPPSLAVQTEGSYVPKNNLEEAILLLMILVRKFCLGKTKWDPSVMEHLTFALSVCGQTSVLAKQFEELIPGVYHRIDRWNSLALCLSAAGQNKSALDLLRKSLHRHERPNDMIALLLAARICNEDPHLAAEGAGYAQRAVNNAKGLDEHLKGVSLRMLGLCLGKQAKVASSDYERSHLQAKALQSLDEAARLEQKNSDIIFELAVQYAEHRNLSAALHYANMFYHETGGSVLKGWRLLALVLSAQKRFSEAEMVTDAALDATAKWEQGPLLRFKAKLKISQSRPMDAIETYRLLLALVQAQRKSFGPLRISSQVDDKVDEFDVWHGLANLYASLSHWKDAEICLQKARELKEHSAATAHTEGVMLDGRGQDQEALATATNATLLESSHVPSKILMGALMMKMGPKALPAARSLLTDALRVEPTNRMAWYHLGLTHKSDGRMADAADCFQAAFMLEETDPIESFSTML 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272090g00017 689 PANTHER PROTEIN NPG1 9 686 IPR043376 -
Stsc272090g00017 689 Gene3D Tetratricopeptide repeat domain 198 526 IPR011990 GO:0005515
Stsc272090g00017 689 SUPERFAMILY TPR-like 397 675 IPR011990 GO:0005515
Stsc272090g00017 689 Gene3D Tetratricopeptide repeat domain 620 685 IPR011990 GO:0005515
Stsc272090g00017 689 SUPERFAMILY TPR-like 126 330 IPR011990 GO:0005515
Stsc272090g00017 689 Gene3D Tetratricopeptide repeat domain 537 619 IPR011990 GO:0005515
Stsc272090g00017 689 MobiDBLite consensus disorder prediction 1 24 - -
Stsc272090g00017 689 Gene3D Tetratricopeptide repeat domain 20 197 IPR011990 GO:0005515
Stsc272090g00017 689 ProSiteProfiles TPR repeat profile. 647 680 IPR019734 GO:0005515
Stsc272090g00017 689 Pfam Tetratricopeptide repeat 649 681 IPR019734 GO:0005515
Stsc272090g00017 689 Coils Coil 397 417 - -
Stsc272090g00017 689 SUPERFAMILY TPR-like 28 351 IPR011990 GO:0005515
Stsc272090g00017 689 MobiDBLite consensus disorder prediction 1 25 - -
Stsc272090g00017 689 SMART tpr_5 114 147 IPR019734 GO:0005515
Stsc272090g00017 689 SMART tpr_5 543 576 IPR019734 GO:0005515
Stsc272090g00017 689 SMART tpr_5 647 680 IPR019734 GO:0005515
Stsc272090g00017 689 SMART tpr_5 298 331 IPR019734 GO:0005515
Stsc272090g00017 689 SMART tpr_5 454 487 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272090g00017 Stsc-Chr272090 56877 60974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272090g00017 11 689 Calmodulin-binding Proteins AT2G43040 71.907 0.0 975
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272090g00017 K21843 - gmx:100811897 1068.91