LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272090g00011	ATGGAGGACAAAGCTGGCAGCAGGTCCTCATCAGATCAGGTTGTTGTCTTCATTGACCAAAATAATAACCACCCCAAACCCCCCTCCTCCTCCTCCATGGATGAGGGTGAGGGGAACAAGCCCCCCAACAAACGACAACCCTTGAGGGTCAAAACCCTTAACCGTCTCAGCTTCTCCAAGCCTAAATCCAGAATCCTCGAATACAATAACTACTATCCCCACCACCACCTCGGCAAGAAGCTATCCAGCATTTCTCAGGAGAACAACAACAAGGAGGATAATAATGAGGACGTGGATGAAGAAGAGGATGAAGAGTGGTGGGAAGAAGAAGAAGAAGAAGAAGAAGAGACGGAGGAGGAGAGTGAGGAAGAGAGGAGTAGTAAGTTGCAGCAGAGGAAGAGGAGGAAGAAGGTGAGGTGGAGGGTGGTGGTGGAGTGGGTGATGTTCGTGAGCATAGCAACATGCTTGGTGTGTTCGCTGGTAATAAAGCGGATAAAGAAGATGCACATGGGAGGTTTGGAGACATGGAAGTGGTGCCTGATGGTGATGGTGACATTCAGCGGGAGGTTGGTGTCGGGGTGGGTGGTGGGAGTGACGGTGTTCATGATAGAGAGGAACTTCATGCTGAGGGAGAAGGTGTTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCCTCTGGCTGGCTCTGCTGCTTCTCTCTTACTGGAGCGTCGTGTTCGACGACGTGCAGAAGAAGAACCACAAGTTCCTTAACAAGGTGTTTCAGGGGCTGGTGGCAGTTCTCGTTGGGGCTATCATATGGCTCGTCAAGATTGTTCTGGTCAAGATGCTGGCCTCCTCTTTCCATGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTGGACACTCTCTCAGGTCCTCCCATGGAGGATGCGGAGGAGATAGTGAGGCAGCACCGGGTGCTGCTGACATCATCAAAAACGATGCCGCCGGGGGGAAGGAGTAGGTTGAACAAGAAGAAGAAGAAGCAGGAGAGGGGTTCTGGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCAGCAGGTCTGCGTGGAGCGTGAAGAGGCTGGTGAACTATGTTCGCTCCTCAGGGCTGTCGACAATCTCCAAGACAGTGGATGATTTCACCACGGCAGAGTCTGAGATCAGCAGTGAATGGGAAGCTAGAAATTGCGCTCAGAGGATTTTCAACAACGTCGCCAAACCTTCTGCCAAGTATATTGAAGAGGAGGATCTGATGAGATTTCTGAAGAGGGTTGAGATACATACCATATTCCCTCTGTTTGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGGTCTTCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAAGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTGGCAAGCGCGATAGTGAGTGTGATAATAATCATTGTGGTCCTTTTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACTCAAATCGTCTTGATTGGGGTTGCCTTCCAAGGCACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCATCCTTTTGACATTGGAGACCGCTGCGTCATTGACGGTGTTCATATGATTGTGGAAGAGATGAATATCTTGACCACAGTGTTTCTTAGATACGACAATGAGAAAATATACTACCCTAATGCAGTTCTGCTCAATAAGCCAATCAGCAATTTCTACAGGAGCCCAGAGATGTGGGATGCTATTGATTTCACCATTGATGCTTCTACTCCCATCGACACTATCATTGCGCTCAAGAAATCAATACAAAACTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGCTGTGCTTGTGCGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATAACTGAGCTCCTTCTCGAACTCAAAAAGATCTTTGAGATTCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCACATGAACATGGAAAATAATCATTTTAATAGTGCCAACAGACCTGTCTTTCAATCATGA	2181	0.4782	MEDKAGSRSSSDQVVVFIDQNNNHPKPPSSSSMDEGEGNKPPNKRQPLRVKTLNRLSFSKPKSRILEYNNYYPHHHLGKKLSSISQENNNKEDNNEDVDEEEDEEWWEEEEEEEEETEEESEEERSSKLQQRKRRKKVRWRVVVEWVMFVSIATCLVCSLVIKRIKKMHMGGLETWKWCLMVMVTFSGRLVSGWVVGVTVFMIERNFMLREKVLYFIYGLRKSIRNCLWLALLLLSYWSVVFDDVQKKNHKFLNKVFQGLVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEIVRQHRVLLTSSKTMPPGGRSRLNKKKKKQERGSGRIDMEKLRELSMESSRSAWSVKRLVNYVRSSGLSTISKTVDDFTTAESEISSEWEARNCAQRIFNNVAKPSAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVVLLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDAIDFTIDASTPIDTIIALKKSIQNYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITHMNMENNHFNSANRPVFQS	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272090g00011	726	Pfam	Mechanosensitive ion channel	491	694	IPR006685	GO:0016020\|GO:0055085
	Stsc272090g00011	726	SUPERFAMILY	Sm-like ribonucleoproteins	541	599	IPR010920	-
	Stsc272090g00011	726	Coils	Coil	81	132	-	-
	Stsc272090g00011	726	MobiDBLite	consensus disorder prediction	8	37	-	-
	Stsc272090g00011	726	MobiDBLite	consensus disorder prediction	328	352	-	-
	Stsc272090g00011	726	MobiDBLite	consensus disorder prediction	93	122	-	-
	Stsc272090g00011	726	PIRSF	Memb_At2g17000	2	723	IPR016688	-
	Stsc272090g00011	726	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	20	714	IPR016688	-
	Stsc272090g00011	726	Gene3D	-	550	599	IPR023408	-
	Stsc272090g00011	726	FunFam	Predicted mechanosensitive ion channel	550	599	-	-
	Stsc272090g00011	726	MobiDBLite	consensus disorder prediction	1	56	-	-
	Stsc272090g00011	726	MobiDBLite	consensus disorder prediction	82	128	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272090g00011	Stsc-Chr272090	35947	39634	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272090g00011	36	710	Mechanosensitive Ion Channel Family	AT5G12080	43.429	0.0	560