Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272088g00008 ATGGGTTGCACATGTTCAAAGAGTTCGGCTGTCGAAGACAGCAGGGAAGGGATCACAAACAAATTCTCGTCATCTAGCACCAGGGCATCGGAACTGAACATTTCGCGGTTGAATTCCTCGAAGAGGGTTGAGGGGGTTCGGGTTAAAGATAAGTCACTAGATGGTAATGATGTGAAAGTTTCATTAATTGATAAGAATGCCAATGGTTCGGTTCAATCATACGATGATCAAACTGGGAAGAAGAAGATAGAGAAACCTGAATTGATTGTTATTGATCATCCTGCTATTGAAAGGATGCCGAAGGCTACAGAGGCAGAGCAAGTTTCAGCAGGATGGCCTGCTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCAAGGGATGGATACCACGGAGCGCAAATACTTTCGAAAGGTTAAACAAAATTGGGCAAGGAACTTACAGTACTGTTTATAAGGCACGTGATGTGACTAATCAAAAGATTGTTGCCCTGAAGAGGGTACGTTTCGACAATCTTGATCCTGAGAGTGTCAAGTTTATGTCAAGGGAAATCCTTGTTCTGCGTAGGCTCAACCATCCAAACATAATAAAGTTGGACAGCTTGATAACATCACCGACATCCCGCAGCTTATACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGCATCAAATCCGGCCATTAAATTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTTCTCCATCGTGATATAAAGGGATCAAATCTTCTCATTGACAACAATGGCATCTTAAAGATTGCGGATTTTGGTTTGGCAAGCTTTTTTGACCCCCATCATAGTGTTCCATTGACAAGCCGTGTTGTAACTCTTTGGTATAGACCACCAGAACTTTTACTTGGAGCAAACCACTATGGGGTTGCCGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGCAGACCTATATTGCCAGGAAAAACAGAGGTTGAGCAGATACATCGGATTTTTAAACTTTGTGGTTCACCGTCTGAGGACTATTGGCTTAAATTGCGGTTGCCGCATTCAACTGTATTCAAGCCTCCACACCATTATAGGAGATGTGTTGCAGACACATTTAAGGATTATCCACATGCTGCTGTGAAGCTCATAGAGACCCTATTATCTGTGGATCCAACACATCGAGGGACGGCTTCCGCTGCTCTCAAAAGTGAGTTCTTTACATCAGAACCTCTGGCTTGTGACCCATCAAGCTTACCAAAATATCCTCCCAGCAAAGAAATCGATGCTAAATTGTGGGATGAAGCAAACAGAAGGCAAGGTGCTGTTGGAGTTAGGGAACAACGAGTTGGCTCAGGACTTAGACAAGAAAAAGTATCAAGGGCACATGTGACAGCAAAAGACAACACTGATTCAGGAGTATCAATGCAGCAAGTGCAACGATATTCCTTTACAAAGAACCGAGCCGAAGTTTCCAACCCTCATAGAGAATATGTGTCCGGACAATTGGATTACCCACCCAAACAGTCAGAAGATGCTAAAGAAACAGGAAATAATCACTCTGGGCATATCTATAGGAGGCCTTCGCATTCAGGTCCATTGGTTCCTGGTTCAAGCTGGGCAAGGGGCGGAAAGGAAGTTGATGATGGGCCTCCTGTTTCGAACAGAGTGAACCTTTCGAAACTATCTGGGCTAATGGCATCTAGGACTCAGGTCTCTGAAGATCAGGAAGGAAAACCAGTTCACTTGCAACACAGAAAACCAGTTGAAATGAGAAAATCCATGGAGTTAACTAGTGGATCAGAGTTGAGAAGAAGACAAGATCAAAAGCGTATTGCAGATCTCAGTCAGATTGAGAATAGAAGGGAGCCCACTGAAAAGTCAACTCCGGATGGACGTGGATCCAGGGGAAACAAGATATATCTATCGGGTCCGTTAATGCCTTCAAGCAACATGGATCAGATGCTCAAAGAGCACGAACGAAAGATCCAGGAACTTTCAAGACGTGCAAGAACTGGCAAGTCACGAGCAAGAGGATGA 2076 0.4398 MGCTCSKSSAVEDSREGITNKFSSSSTRASELNISRLNSSKRVEGVRVKDKSLDGNDVKVSLIDKNANGSVQSYDDQTGKKKIEKPELIVIDHPAIERMPKATEAEQVSAGWPAWLSSVAGEAIKGWIPRSANTFERLNKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMSREILVLRRLNHPNIIKLDSLITSPTSRSLYLVFEYMEHDLTGLASNPAIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQIHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVADTFKDYPHAAVKLIETLLSVDPTHRGTASAALKSEFFTSEPLACDPSSLPKYPPSKEIDAKLWDEANRRQGAVGVREQRVGSGLRQEKVSRAHVTAKDNTDSGVSMQQVQRYSFTKNRAEVSNPHREYVSGQLDYPPKQSEDAKETGNNHSGHIYRRPSHSGPLVPGSSWARGGKEVDDGPPVSNRVNLSKLSGLMASRTQVSEDQEGKPVHLQHRKPVEMRKSMELTSGSELRRRQDQKRIADLSQIENRREPTEKSTPDGRGSRGNKIYLSGPLMPSSNMDQMLKEHERKIQELSRRARTGKSRARG 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 666 684 - -
Stsc272088g00008 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Stsc272088g00008 691 Coils Coil 661 688 - -
Stsc272088g00008 691 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272088g00008 691 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 463 477 - -
Stsc272088g00008 691 CDD STKc_CDK9_like 135 419 - -
Stsc272088g00008 691 Gene3D Transferase(Phosphotransferase) domain 1 218 457 - -
Stsc272088g00008 691 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Stsc272088g00008 691 PANTHER CELL DIVISION PROTEIN KINASE 133 424 - -
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 455 691 - -
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 478 501 - -
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 1 29 - -
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 587 645 - -
Stsc272088g00008 691 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Stsc272088g00008 691 SUPERFAMILY Protein kinase-like (PK-like) 128 425 IPR011009 -
Stsc272088g00008 691 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Stsc272088g00008 691 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Stsc272088g00008 691 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272088g00008 691 MobiDBLite consensus disorder prediction 568 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272088g00008 Stsc-Chr272088 60224 68044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272088g00008 127 462 Core Cell Cycle Gene Families AT5G10270 47.578 4.28e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc272088g00008 Pkinase 7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272088g00008 - - gmx:100807590 1076.23