Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272088g00007 ATGGCTATTGCAGGGAAAAGAAGGCCTAATAGGCCTTTGATTAGTGAGGTTGTGAATCTTTCTGATGTTTTTTTGGATGAAATGTTTGTGGGATTTTGTGGGGCAACAGGACAACTTGTTGAGAGTCACAAGATCTTGGCATGGAGCTTTAGCAACTCGAACTTTTCCATCGGCGATGCTTTGGTTACTATGAATTTGCCTTCATTTGTGCTTCCAACAGAACCAGTTTTGAGGTCAAGAGGATTTGTTTCAGGGATTACTGTTGGTGTTTTTATCATTGTTGTTGGTGGTGCAGCTATGGTGTTTGTGATTATGTTCAGAAGAAAAAGGAACAAAAGAATGGAGGAAGAGGGTGATACTGAAGACTGGGAATCAGAGTATTGGCCACACCGTATCAGTTATGAAGACATCTATGCTGCAACTAAAGGATTTTCAGAAGAGAATGTAATTGGGTTTGGAGGGAATGGAAAAGTTTATAAAGGGCTTCTACAAGGAGTAGAAGTAGCGGTGAAAAAAATCCCTTATGACAGAGAATATGGTATGAGGGAATTTTTATCTGAGATTTCCATTTTAGGAAGATTGAAGCATAGGAATGTGGTTCCCTTGAGGGGTTGGTGCAAGAAAGAGAGAGGAAGCTTGATCCTAATTTATGATTACATGGAAAATGGAAGTTTGGACAAGAGAATATTCGATTCTGATGAGAACTCAATTTTCCATTGGAAAAACAGAATCAAGGTGCTGAAGGATGTTGCTATGGGGATATTGTATTTGCATGAGAGTTGGGAAGTTAAGGTGTTGCATAGAGACATAAAAGCGAGCAATGTGTTACTTGACAAGGATATGAATGCAAGATTGGGGGATTTCGGAGTTGCCCAGATGCACCATCACGAGCAGATTGCTAACACCTCTCGAGTGATCGGAACGGTCGGCTACATAGCACCGGAACTGCTAAGAACCGGGAGAGCCTCGACGCAAACCGACGTGTTCAGCTTCGGCGTGTTGGCTCTAGAAGTTGTGTGTGGGAGAAGGCCTATAGAAGAGAACAAGCCAGCATTGGTTAGTTGGGTTTGGAGGCTAATGGAGAGTGGAGAGTTGTGTTATGCTATTGATGAAAGATTGAAAATGAGGGATGATGAAGAATATAGCATTGATGAAGTTGAGAGAGTTCTTCATGTTGGTTTGTTGTGCACACATTATGATCCTCAAGTCAGGCCAAGTATGAGGCAAGTTGTGAAGGTTCTGGAAGGTGAGAGTTTGGATATAAGCTTGATTGATAAAATAAATTCAGCTGCTGCTGGATATGGTGGAGTTAATCCCACCATTGAGGATGTATCTCAATGTTCTTTCACAACTCAATATGAGGGCAGATGA 1371 0.4165 MAIAGKRRPNRPLISEVVNLSDVFLDEMFVGFCGATGQLVESHKILAWSFSNSNFSIGDALVTMNLPSFVLPTEPVLRSRGFVSGITVGVFIIVVGGAAMVFVIMFRRKRNKRMEEEGDTEDWESEYWPHRISYEDIYAATKGFSEENVIGFGGNGKVYKGLLQGVEVAVKKIPYDREYGMREFLSEISILGRLKHRNVVPLRGWCKKERGSLILIYDYMENGSLDKRIFDSDENSIFHWKNRIKVLKDVAMGILYLHESWEVKVLHRDIKASNVLLDKDMNARLGDFGVAQMHHHEQIANTSRVIGTVGYIAPELLRTGRASTQTDVFSFGVLALEVVCGRRPIEENKPALVSWVWRLMESGELCYAIDERLKMRDDEEYSIDEVERVLHVGLLCTHYDPQVRPSMRQVVKVLEGESLDISLIDKINSAAAGYGGVNPTIEDVSQCSFTTQYEGR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272088g00007 456 ProSiteProfiles Protein kinase domain profile. 144 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272088g00007 456 Gene3D - 1 77 - -
Stsc272088g00007 456 Pfam Protein kinase domain 145 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272088g00007 456 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Stsc272088g00007 456 Gene3D Transferase(Phosphotransferase) domain 1 220 427 - -
Stsc272088g00007 456 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 164 IPR013320 -
Stsc272088g00007 456 Pfam Legume lectin domain 6 54 IPR001220 GO:0030246
Stsc272088g00007 456 PANTHER - 9 418 - -
Stsc272088g00007 456 FunFam L-type lectin-domain containing receptor kinase S.4 220 425 - -
Stsc272088g00007 456 SUPERFAMILY Protein kinase-like (PK-like) 122 415 IPR011009 -
Stsc272088g00007 456 Gene3D Phosphorylase Kinase; domain 1 104 219 - -
Stsc272088g00007 456 CDD STKc_IRAK 150 416 - -
Stsc272088g00007 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Stsc272088g00007 456 SMART serkin_6 144 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272088g00007 456 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 103 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272088g00007 Stsc-Chr272088 57921 59527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272088g00007 1 366 Receptor kinase-like Gene Family AT4G04960 61.995 2.08e-150 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc272088g00007 Pkinase 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272088g00007 - - adu:107478122 755.747