Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272087g00014 ATGGATATGGATATGGATATGAATATGGAAAAGATGCAAAATCAAAGTGTACATTTTGTTCTATCCACTGATGCAAAACCAAGGCTGAAATGGACTCCTGAGCTTCACCAAATATTCATTGAGGCAGTTCATCAGCTTGGAGGTGCAGAGAAAGCAACTCCAAAGAGTCTTATGAGAGTGATGGGGATACAAGGACTTACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCAACACCTAGAAACCTGTTCTGACAATCAACAAGAAGACTGCAGAAAAATCAAGGGTAGTAATGGTCATTGCAGCAAGGAAAACAGTTTTGGGGAACAGAAACAAATCACTGAGAACAAGATAGCTCAGGCTTTCCATATGCAAATGGAGGTACAAAGGAAACTTTGTGAACAAATTGAGGTGCAGAAACATTTACAGCTTCGGATCGAAGCTCAAGGGAAGTACTTGCATTCGGTGTTAAAGAAAGCCCAAGATGCACTTCAAGGGTACAATTCTTCCACAGTAGGACTAGAACTCACAAAATCAGAACTCTCTCAACTAGTTACAGTGATCAACAATGCTTGTCCAAGTTCTTCAATCTCAGAACTCACAGAAACTAGAGGGTTAAGTTTTAGAAGTGATGATGAGAGGAAACAAGACAAAGGAACCATGTGCTCATTGGAGAGTTCTTTGACTTCTTCTGAAAGCTGTGGGAGAAATGAAGAGAAACACCAGCCAATGGAAGAAGAAGAAACAACAAGGAAGTTGAAATTTTTTAATGAAACTAAAGTTGAATTTCCCTTTGAGGCATTTCATCAAACAGGTAAAGCGCATAGTGGGGATGATTCAAGCAAAGAAGAAATTGGGAGAAAGAGAAATAAGAAAACTGATTCTGAAGGTAGCTACTGTGTTGAACAACCATCTGGAAAAAGATGTGGCAACAAATTGAGGAAACTTGAGTTTGATTTGAACAACCAATATCACAGTGACACGGACTCAAGATAA 1014 0.3915 MDMDMDMNMEKMQNQSVHFVLSTDAKPRLKWTPELHQIFIEAVHQLGGAEKATPKSLMRVMGIQGLTLYHLKSHLQKYRLGKSQHLETCSDNQQEDCRKIKGSNGHCSKENSFGEQKQITENKIAQAFHMQMEVQRKLCEQIEVQKHLQLRIEAQGKYLHSVLKKAQDALQGYNSSTVGLELTKSELSQLVTVINNACPSSSISELTETRGLSFRSDDERKQDKGTMCSLESSLTSSESCGRNEEKHQPMEEEETTRKLKFFNETKVEFPFEAFHQTGKAHSGDDSSKEEIGRKRNKKTDSEGSYCVEQPSGKRCGNKLRKLEFDLNNQYHSDTDSR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272087g00014 337 MobiDBLite consensus disorder prediction 273 313 - -
Stsc272087g00014 337 MobiDBLite consensus disorder prediction 205 255 - -
Stsc272087g00014 337 MobiDBLite consensus disorder prediction 240 255 - -
Stsc272087g00014 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 26 81 IPR006447 GO:0003677
Stsc272087g00014 337 SUPERFAMILY Homeodomain-like 25 81 IPR009057 -
Stsc272087g00014 337 MobiDBLite consensus disorder prediction 278 302 - -
Stsc272087g00014 337 MobiDBLite consensus disorder prediction 211 226 - -
Stsc272087g00014 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 267 IPR044848 GO:0003700
Stsc272087g00014 337 FunFam Myb family transcription factor 25 83 - -
Stsc272087g00014 337 Gene3D - 25 83 - -
Stsc272087g00014 337 Pfam MYB-CC type transfactor, LHEQLE motif 123 168 IPR025756 -
Stsc272087g00014 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 83 IPR017930 -
Stsc272087g00014 337 Pfam Myb-like DNA-binding domain 28 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272087g00014 Stsc-Chr272087 64845 67043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272087g00014 19 209 G2-like Transcription Factor Family AT1G69580 56.436 2.47e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc272087g00014 Myb_DNA-binding 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272087g00014 - - gmx:100787178 404.06