Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272087g00007 ATGGCTTCCCAGCCTGACGTTTCCGAGATTTCCTCTCTTTTCGAAAGATTAGTTAGAAGCAGAGAAATGACTCTGTTTCTGCCTTTCCTCTTTGGCTTCTCTGATTCTCAATCTCATTCTTCATCGCAAAACGACGAAGCGGGAGAAAGGACCACCGATGGTCCCAACCGTGAGAGGATCATACTAGTAAACCCCTTCACGCAAAGCATGGTGGTAATCGACGGCTCTTCAAGCCTCGAAGCTCTGTTTCGCGAGATTGCCGCTAACAACGGTGGCAAAGGCGGAAGACCACCGGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTCGAAATCAAAGAAGGTGAATTCGAAGGAGGAGAGTGCGTGGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAGGAGATGCCATGTAAGCACAGGTTCCACCCGAATTGCATTGAGAAGTGGCTTGGGATCCATGGAAGTTGTCCTGTTTGCAGGTACGAGATGCCTGTTGAGGAAAAAGATGTAGGAAAGAAGAGAGAGAGTGAACAAGAAGAAGAAGAAGAAGAAGAAAGGGGAGAGAGAGAGAGGAGAAGAATTGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTCAATAGGGGTATTAGTAGGAGAAATAGCCACGATCAAGATCAACCTCAAAACCAGGATCAGAATCAGAATCAAGATTCTTCTTCTGGTGGTGGTGATGATGAACGTAACTCTGGTGATTCTGGTAGAGTTGATGTTGAAGCAGAAAATTAG 774 0.4599 MASQPDVSEISSLFERLVRSREMTLFLPFLFGFSDSQSHSSSQNDEAGERTTDGPNRERIILVNPFTQSMVVIDGSSSLEALFREIAANNGGKGGRPPATKESIDAMPSFEIKEGEFEGGECVVCLEDFGVGALVKEMPCKHRFHPNCIEKWLGIHGSCPVCRYEMPVEEKDVGKKRESEQEEEEEEERGERERRRIGNGEVWVSFSFNRGISRRNSHDQDQPQNQDQNQNQDSSSGGGDDERNSGDSGRVDVEAEN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272087g00007 257 SUPERFAMILY RING/U-box 113 168 - -
Stsc272087g00007 257 MobiDBLite consensus disorder prediction 170 196 - -
Stsc272087g00007 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 167 - -
Stsc272087g00007 257 FunFam E3 ubiquitin-protein ligase RNF181 87 169 - -
Stsc272087g00007 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 170 IPR013083 -
Stsc272087g00007 257 MobiDBLite consensus disorder prediction 210 257 - -
Stsc272087g00007 257 MobiDBLite consensus disorder prediction 222 242 - -
Stsc272087g00007 257 MobiDBLite consensus disorder prediction 36 57 - -
Stsc272087g00007 257 MobiDBLite consensus disorder prediction 243 257 - -
Stsc272087g00007 257 SMART ring_2 122 162 IPR001841 -
Stsc272087g00007 257 Pfam Ring finger domain 121 163 IPR001841 -
Stsc272087g00007 257 ProSiteProfiles Zinc finger RING-type profile. 122 163 IPR001841 -
Stsc272087g00007 257 Coils Coil 175 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272087g00007 Stsc-Chr272087 32137 33370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272087g00007 8 221 C3H Transcription Factor Family AT1G26800 50.467 6.13e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272087g00007 - - adu:107489464 321.627