Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272086g00010 ATGGAAATGGAGTTAATATCCAGAGAAACCATGAAACCAAGTTCACCCACGCCTCCTCATCTGGAAACTTATCCCCTCTCTTTCATGGACGTTAAAACTAATCCTACTTACGTCCCTCTAGTTTACTTCTACCGCTCCAATAACCACCAGCTTCTAGAAACTACCATAGCCATCCTCAAGAAATCATTATCTGAAGCTCTCTCAATGTATTACCCAATGGCAGGTAGGTTCAGAGATCAAGTCGCCATCCACTGCAACGATCAAGGAGTTCCATTGCTCATCACAGCAATCAAACGCGATCTCTCTCACATTCTCAACAACACAACCCACGCAAATCTTCTCCCTCTCTTCCCTCAAAATCTCCCATGGACCGCTATGCAGAACCCAACTCATGACCCCATACTCGCCATTCAAATCAACACCTTCTCCTGCGGCGGAATCGCAATTGCCCTCTGCATGTCTCACAAGTTCAGCGACATCTCCGCTCTCTTCAACTTCGTCAACGACTGGGCTGCCATCACCAAGAATTATCAGAATCAGGATCACTCACTGACACTGCCCTCTCCGCCTTTGCTCCACGCCGGAGTTTCTCTTTTCCCTCTAGGAGATTTTCCGGTTTACCCGGAACCACAGTACCCTGAGATCCATAACACGGTGTGCAAGAGGTTTGTGTTCCAAGGCTCCAGGATCGATTCCCTCAAAGCCATGACTGCACCAGTTCACGCTACAAGGATTCAAGCGGTGACTGCACTGATATGCAAGTGTGCAATTTCTGCGCTAGGGTTAAGCCCTAACACACCGTTGTTAAGCTCCGTTGCTGTGAACCTCCGCAATAGAATCGATCCTCCTATTCCAAGCAAGACCGTAGGGAACATGATTTCGTTCTTCACGTTTAGTTCGTCTCAGACAGATCAGGTGCCGGAGTTGGTAAGCAAGATGAAGAAAGGGATGGCAGATAGCGAGAAGGAGATGAAGAAGTACGGAGGGAAGAATAGGGATTTGGATTTCATTGGTGAGTTCATGAAAGAAGAGGAGGCAGAGGCAGAGGCTCCGGTGGATCCGGTGGTGATATTTTCAAGCTGGTGTAGGTTTTCAATGTACGAAGCGGATTTTGGATGGGAGAAACCGGTGTGGATATCGAGTGTGAGTAATGTAACGAACCTGGTGATTCTTATGGATGCGAGAGATGGGAAAGGGATGGAAGTGGTTTTGAGCATGGAAGAGGAGCACATGGCAAGGATAGAAGGCATGGAGATGGAGTTAATATGCAAAGAAAGCATGAAACCAAGTTCAGCAACTCCTCTAAACCTCAAAACTTATCCCCTCTCCTTCTTTGATGTGACAACAACTCCCCAATACATGCCAATTCTTTACTTTTACCATCCAAAACAAATTGAAAACCAAGAATCCATGATAGCCCTGCTCAAGGAATCCTTACAGGAAGCTCTCTCAGCGTACTACCCAATTGCAGGCAGGTTCAAAGGTCAACTCGCCATTGACTGCAACGACGAAGGAGTGCCATTGCTAATCACAAAACTCAAATGCCATCTCTCAAACTTTCTCAAAAACCCAATCACACCAAACCTTCTTCCTCTCTTCCCGGACAATCTTGCATGGAGCGATATGAACAATCCAGAGCATGATCCCATCATGGCCATTCAAATCAACTGCTTCCAATGCGCATTCTGCCTCTCTCACAAGCTCGGCGACGTTTCCACTCTCATCAACTTCGTCAACCACTGGGCCGCCATCGCCAGCCACCACCAAGATCAGAACAAGCCGCTACTTTCTCCGCCCTTACTCGACGCAGGAGTTTCGATTTTTCCTCAAGGAAACCTTCCAGCATACGGCGAAAAGCACTACTTGGCTCATCCGAAAACGGTTTGCAAGAGGTTCGTGTTCGAAGCTTCCAAGATCGAAGCCCTGAAAGCCATGGCTGGAGCAATTCACCCGACAAGGTTTCAAGCGGTGGCAGCACTGATTTGTAAGTGTGCGGTTTCTGCACTAGGGTTAAGCCCTAACTCGGAGTTGTTAACCTCCGTTGTGGTGAATCTCCGGAAGAGGATGGATCCTGCTGTTCCTAGCAACACAATAGGGAACATGCTTTCGTTCTTCAAAATTAGGTCGTCTGAGAGGGATCAGGTACCGGAGTTGCTAAGCAAGATGAAAGAGGGGATGATTGGTAGCGAGATGCAGTGGAAGAAGTATGGAGGAAAGTACAGGGATTTAGATTTCACCGCCCAGGCTCTCAAACGAGAGGCAGAGAGTCCGGCGTCAGAGGCTTTGAAGTTCCCGGTGATGGGACTTACTAGTTGGTGCAGGTTTTCAATGTACGAGGCGGATTTTGGGTGGGGAAAAGAGGTGTGGATAGCGTCCGTTATGAGTATCCGGAACGGTGTGGTTTTTATGGATGCGAGAGATGGAAAAGGGATGGAAGTGATTGTGAACATGGAAGAGCAGCACATGGCAAGGTTTGAATGCAACGAGGATTCGCTTCAATATGCCTCTCTTGACCCACCCCTTCAACTCTGA 2532 0.4799 MEMELISRETMKPSSPTPPHLETYPLSFMDVKTNPTYVPLVYFYRSNNHQLLETTIAILKKSLSEALSMYYPMAGRFRDQVAIHCNDQGVPLLITAIKRDLSHILNNTTHANLLPLFPQNLPWTAMQNPTHDPILAIQINTFSCGGIAIALCMSHKFSDISALFNFVNDWAAITKNYQNQDHSLTLPSPPLLHAGVSLFPLGDFPVYPEPQYPEIHNTVCKRFVFQGSRIDSLKAMTAPVHATRIQAVTALICKCAISALGLSPNTPLLSSVAVNLRNRIDPPIPSKTVGNMISFFTFSSSQTDQVPELVSKMKKGMADSEKEMKKYGGKNRDLDFIGEFMKEEEAEAEAPVDPVVIFSSWCRFSMYEADFGWEKPVWISSVSNVTNLVILMDARDGKGMEVVLSMEEEHMARIEGMEMELICKESMKPSSATPLNLKTYPLSFFDVTTTPQYMPILYFYHPKQIENQESMIALLKESLQEALSAYYPIAGRFKGQLAIDCNDEGVPLLITKLKCHLSNFLKNPITPNLLPLFPDNLAWSDMNNPEHDPIMAIQINCFQCAFCLSHKLGDVSTLINFVNHWAAIASHHQDQNKPLLSPPLLDAGVSIFPQGNLPAYGEKHYLAHPKTVCKRFVFEASKIEALKAMAGAIHPTRFQAVAALICKCAVSALGLSPNSELLTSVVVNLRKRMDPAVPSNTIGNMLSFFKIRSSERDQVPELLSKMKEGMIGSEMQWKKYGGKYRDLDFTAQALKREAESPASEALKFPVMGLTSWCRFSMYEADFGWGKEVWIASVMSIRNGVVFMDARDGKGMEVIVNMEEQHMARFECNEDSLQYASLDPPLQL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272086g00010 843 Coils Coil 465 485 - -
Stsc272086g00010 843 Gene3D - 420 614 IPR023213 -
Stsc272086g00010 843 Gene3D - 1 203 IPR023213 -
Stsc272086g00010 843 PANTHER F21J9.9 4 415 - -
Stsc272086g00010 843 Pfam Transferase family 418 828 - -
Stsc272086g00010 843 Pfam Transferase family 2 415 - -
Stsc272086g00010 843 Gene3D - 216 419 IPR023213 -
Stsc272086g00010 843 Gene3D - 625 834 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272086g00010 Stsc-Chr272086 62205 66381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272086g00010 417 826 Monolignol Biosynthesis Gene Families AT5G48930 23.841 1.24e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272086g00010 - - adu:107481923 678.322