Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272086g00007 ATGTACTTGTCGGAAAAGCCCCGACCCATTGATTTTTATAAAGAAGAGAGCAGCACGCGTGACATGATCATCGAGGTCGTCTCCAACGGCGCTGCCGACCTCCCTCCTCCGCCCTCACACCACCAGCAGCAGATGATCCTTGGTGACAGCAGCGGCGGCGAAGACCCTGAGGTTGAGATCAAGGCGCCAAAGAAGCGCGCCGAGACGTGGATCCACGAAGAGACTCGAACCCTGATCGCGCTCCGGCGAGAAATGGATGCCCTTTTCAACACTTCTAAGTCCAACAAGCACTTATGGGAGCAGATTTCTTCCAAGATGAGGGATAAGGGTTTCGATCGCTCTCCGACCATGTGCACCGACAAGTGGAGGAACCTCTTGAAGGAGTTCAAGAAGGCCAAGCACAATGATGGCGGAGGAGGAGGTGGTGGTGGTGGTGGCGGCGGAGGGAGTGGCTCCGCCAAGATGTCGTATTACAAGGAGATTGAGGAGATTTTGAGGGATAGGAGCAAGTGTGTGCAGTATAAGAGCCCTACTCCTCCGCCGCCTCCACCACCTAATCACAAAGTTGAGTCTTTCATGCAATTCACTGATAAAGGTATCGAGGATACCAGCATCTCTTTTGGTCCAGTTGAAGCTACTGGAAGACCAACACTCAATCTTGAGAGACGTTTGGATCATGATGGGCATCCTCTTGCCATTACGACAGCTGATGCTGTTGCAGCTAGTGGTGTTCCTCCTTGGAATTGGAGAGAAACTCCTGGAAATGGTGAAGAGGGTCAGTCATGTTGTGGAAGGGTTATATCTGTGAAATGGGGTGATTATACGAGAAGAATAGGTATTGACGGTGCTTCAGAAGCCATCAAGGAGGCTATAAGAGCTGCTTTCCGGTTAAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGACCAGATAATCAGAAGTCTTGACCGTGATATGCCTTTAGGAAATTATACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTGTGTCTTTATGATGAGTCTGACCATATCCCTGTGCATACTGAAGAGAAGATCTTCTACACAGAAGACGATTATCGTGATTTTTTGACACGCCGGGGTTGGACATCTCTAAGAGAATTTGACGGTTATAGAAATATTGATAACATGGATGATCTTCGACCCGGTGCCATATACCGGGGTGTGACTTGA 1194 0.4891 MYLSEKPRPIDFYKEESSTRDMIIEVVSNGAADLPPPPSHHQQQMILGDSSGGEDPEVEIKAPKKRAETWIHEETRTLIALRREMDALFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHNDGGGGGGGGGGGGGSGSAKMSYYKEIEEILRDRSKCVQYKSPTPPPPPPPNHKVESFMQFTDKGIEDTSISFGPVEATGRPTLNLERRLDHDGHPLAITTADAVAASGVPPWNWRETPGNGEEGQSCCGRVISVKWGDYTRRIGIDGASEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSLDRDMPLGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLTRRGWTSLREFDGYRNIDNMDDLRPGAIYRGVT 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272086g00007 397 SUPERFAMILY Homeodomain-like 67 127 IPR009057 -
Stsc272086g00007 397 MobiDBLite consensus disorder prediction 132 152 - -
Stsc272086g00007 397 Gene3D - 70 132 - -
Stsc272086g00007 397 SMART sant 66 128 IPR001005 -
Stsc272086g00007 397 CDD GT1 68 133 - -
Stsc272086g00007 397 PANTHER FI21293P1 46 395 - -
Stsc272086g00007 397 FunFam trihelix transcription factor GT-1 70 132 - -
Stsc272086g00007 397 ProSiteProfiles Myb-like domain profile. 62 126 IPR001005 -
Stsc272086g00007 397 Pfam Myb/SANT-like DNA-binding domain 69 163 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272086g00007 Stsc-Chr272086 32618 36640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272086g00007 22 396 Trihelix Transcription Factor Family AT3G25990 69.415 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc272086g00007 Myb_DNA-bind_4 5.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272086g00007 - - ccaj:109807736 668.692