Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272086g00006 ATGGATGTTGTGGATACTGTGCTGGTAACAGCCAATGTGGGATTCTTCTATGCAATTCTGATATGGCTTCTTCTTCACACTTTGAGACAAAGCAAGCTTCGACGTGTTGTGTTTCTTGAACAAGAACCAAACTTTTTCTCCACAATCACTCTCCTACTCAATTTCATTCTTACCCTTTTAACAATAGCTTTTGCGTTTCATGAATATAGGACTAATAAAATAGTGAGACATAGTTCTGTTACCTTTGCTCTGACATGGGTTATGGCAAGCTTAGTTTCATTCTATCTAATGAAGAAGACTACAAGAGACAACAAAGGGTTCCCCTTTGTTCTAATTCTTTGGTGGGTTTGGGCCAGTATTGTAGAAGCAATCTCAGTTTCTATTGGACTAATGAAGAACAACTTGGACTTGTGGATGTTCTTGTCAGAGGATGATAACATAGTTGGTGTGGTTTCCTTGCCTATGTTGCTGTTGCTTCTGTGTCTGAATGTATGTGCAAGAGAAGAACAATACACCACTGACATGGAACAGCTCTTAGTTCACAACAAGTCTAAAGAAGAAGAAGATGATGAAGATGGAGATGGAGAGAACTTCACAAATGCAGGCATTTGGAGCCAACTCACATTTAGATGGTTGAACCCCATTTTTAGAAAGGGTCGAGTTCAGAAGCTTGAGCTTGCTCACATTCCTGATGTTCCTCATTCTGAAACTGCAGAAAACGCTTCTTCCATATTGGAAGAATCCCTTCGCAAACACAAACTTGAAGAGGGTTCCTTGACTAAAGCTATAGCCAGCTCTGTGTGGAAGTCCTTGGCCTTAAATGCAGTTTTTGCTGGGGTTAATACAATTGCATCTTATATGGGTCCATTGTTGATTACATACTTTGTGAATTTCTTGGTGGATGATAATTCCAATTCAAGCATCCAATTTGGCCTCATTCTTGCATTCATATTCTTCCTCTCAAAGACATTGGAATCACTGAGCCAAAGACAATGGTACTTTGGTGCTCAGAGAATTGGTATTCGAGTGCGCGCGGCTCTTATGACTCTAATTTACAGCAAGTCCTTAATGATCAAGTGTGCAGGACCAACCCATGGCAAAATCATAAACTTGGTGAATGTGGATGTTGATAGAGTTGGGGATTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTTATTTTGGCCTTAGTGATATTGTACATAAACCTGGGATTCTTGCCTTCAATTTCTGCACTTGCTGTCACCATTTTGGTTATAATGTGTAACACACCTTTGGCTAATATGCAAGAAAAACTACACTCCAAGATCATGGAAGCTAAGGATACAAGAATCAAGACTACTTCAGAGATAATGAAAAACATAAGGATACTGAAATTGCATTCATGGGAATCCACATTCTTACAGAAACTCTTCCAATTCAGAGACACTGAGAAGAGTTGGCTGAAGAAGTACCTCTACACTTGCTCAGCAGTAGCCACTCTTTTCTGGACTTCACCGACTTTGGTTTCTGTTGTTACTTTCGGTGTCTGCATACTGGTTAAGACAGAACTAACTGCGGCTACTGTCCTCTCAGCCTTAGCAACTTTTCGGATTCTGCAGGAACCAATCTACAATCTTCCTGAGCTTATTTCCATGATAGCTCAAACAAAAGTCTCTATTGATAGAATCCAAGAGTTGATCAATGAAGAGGATCAGAACCAGTTTATGAACAAGCACGCTTCAAAAGATTCATTAATTGCTATTGAAGTCAAGCCAGGTGAATATGCATGGGAAACAAATGATCAAACCAACAAGAAACCAATAATTCAAATCACAGAAAACTTGTTGCTAAAGAAAGGTCAGAAGGTTGCAGTTTGTGGTTCAGTGGGGTCTGGAAAATCAAGCTTACTTTGTTGTATGCTTGGTGAGATTCCGTTGGTTTCTGGGGCATTGATCAAAGTCTATGGAACAAGAAGTTATGTGCCACAGAGTCCCTGGATTCAGTCAGGAACAGTAAGAGAAAATATACTGTTTGGAAAGGAAATGAACAAGGACTTGTATGAAAGTGTTTTGGATGGCTGTGCTTTGCATCAAGATATCAACATGTGGGGTGATGGAGATTTAAATCTTGTGGAGGAGAGGGGCATAAACTTAAGTGGAGGCCAGAAACAACGGATTCAACTCGCAAGAGCTGTTTACAGTGATTCAGATATTTACTTCCTTGATGATCCTTTCAGTGCAGTTGATGCTCATACTGGAACTCATTTGTTTAAGAAATGCCTTATGCAACTTTTGTCGGATAAGACAGTTGTTTATGCTACTCATCAACTAGAATTTTTGGAAGCTGCAGATTTGATTCTGGTAATGAAAGGTGGAAAAATAGTAGAGTCAGGAAAGTACAGAGAACTCATAGCATGTCCCAACTGTGAATTTGTTCGACAAATGGCAGCTCATGAAGAAACAATAAACCAAATAAATCCATGGCATGAAGATAATTCCATTAGCTCCAGGCCCCTTCAAAAGAATCAAATTGAAGTTGCTGAAGAGAATCTTCAAGATAGCATAAGGAATTTTAAGAAAAACAAAGAAGAAGAAGCGGAGACTGGTCGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACAGCTGCATATAGAGGATCACTTGTTCCGGTGATTCTTCTCTGCCAGGTTCTGTTTCAAGTGATGCAAATGGGAAGCAATTATTGGATTTCTTGGGCCGCAGAACAAACTGGGAAGGTCACCAAAGGGCAGCTTATAGGAACATTTGTTCTTCTTTCTGGTGGAAGCTCTATCTTTATACTTGGAAGGACTGTTTTGATGGCAGTGGTTGCTGTTGAGACCGCTCAGCGTCTTTTTCATGGAATGATTACATCTGTTTTCAGAGCACCTGTTTCATTTTTTGATACCACACCTTCAAGCAGAATCCTCAGTAGGTCATCAACAGATCAAAGTACAGTTGACACAGACATACCTTACAGATTAGCAGGACTAGTGTTTGCACTAATTCAGTTGTTGAGTATCATCGCGCTAATGTCCCAGGTTGCGTGGCAAGTCATCCTTATCTTTGTTGTGGCGTTTGCTATCTCCATATGGTATCAGGCTTATTACATTACCACTGCCAGGGAATTAGCAAGGATGGTAGGGATTAGAAATTCCCCAATCTTGCATCATTTCTCAGAATCTATTGCTGGTGCTGCCACAATTCGTTGTTTCAATCAAGAGCAAATATTCATGACCAAAGTCAAGGATCTTGTTGATGAATACTCTAGAGTAGCCTTTCATAATTATGCCACCATGGAATGGTTGTCTGTCCGGATCAATTTCCTCTTCAATCTAGTGTTCTACTTTGTTCTCATCATCTTGGTTACTCTGCCAAGGTCTGCCATTGATCCCAGTAAGTTCCTCCTTCCCCATTTAATATTTGATGATAGCAGTTACAAACATGATACATGTAAGTGA 3471 0.401 MDVVDTVLVTANVGFFYAILIWLLLHTLRQSKLRRVVFLEQEPNFFSTITLLLNFILTLLTIAFAFHEYRTNKIVRHSSVTFALTWVMASLVSFYLMKKTTRDNKGFPFVLILWWVWASIVEAISVSIGLMKNNLDLWMFLSEDDNIVGVVSLPMLLLLLCLNVCAREEQYTTDMEQLLVHNKSKEEEDDEDGDGENFTNAGIWSQLTFRWLNPIFRKGRVQKLELAHIPDVPHSETAENASSILEESLRKHKLEEGSLTKAIASSVWKSLALNAVFAGVNTIASYMGPLLITYFVNFLVDDNSNSSIQFGLILAFIFFLSKTLESLSQRQWYFGAQRIGIRVRAALMTLIYSKSLMIKCAGPTHGKIINLVNVDVDRVGDFCWYIHGVWLLPVQVILALVILYINLGFLPSISALAVTILVIMCNTPLANMQEKLHSKIMEAKDTRIKTTSEIMKNIRILKLHSWESTFLQKLFQFRDTEKSWLKKYLYTCSAVATLFWTSPTLVSVVTFGVCILVKTELTAATVLSALATFRILQEPIYNLPELISMIAQTKVSIDRIQELINEEDQNQFMNKHASKDSLIAIEVKPGEYAWETNDQTNKKPIIQITENLLLKKGQKVAVCGSVGSGKSSLLCCMLGEIPLVSGALIKVYGTRSYVPQSPWIQSGTVRENILFGKEMNKDLYESVLDGCALHQDINMWGDGDLNLVEERGINLSGGQKQRIQLARAVYSDSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLSDKTVVYATHQLEFLEAADLILVMKGGKIVESGKYRELIACPNCEFVRQMAAHEETINQINPWHEDNSISSRPLQKNQIEVAEENLQDSIRNFKKNKEEEAETGRVKWSVYSTFVTAAYRGSLVPVILLCQVLFQVMQMGSNYWISWAAEQTGKVTKGQLIGTFVLLSGGSSIFILGRTVLMAVVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIALMSQVAWQVILIFVVAFAISIWYQAYYITTARELARMVGIRNSPILHHFSESIAGAATIRCFNQEQIFMTKVKDLVDEYSRVAFHNYATMEWLSVRINFLFNLVFYFVLIILVTLPRSAIDPSKFLLPHLIFDDSSYKHDTCK 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272086g00006 1156 Gene3D - 598 840 IPR027417 -
Stsc272086g00006 1156 CDD ABC_6TM_ABCC_D1 273 560 IPR044746 GO:0140359
Stsc272086g00006 1156 ProSitePatterns ABC transporters family signature. 715 729 IPR017871 GO:0005524|GO:0016887
Stsc272086g00006 1156 FunFam ABC transporter C family member 10 255 568 - -
Stsc272086g00006 1156 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 587 813 IPR003439 GO:0005524
Stsc272086g00006 1156 Pfam ABC transporter 611 742 IPR003439 GO:0005524
Stsc272086g00006 1156 SUPERFAMILY ABC transporter transmembrane region 265 567 IPR036640 GO:0005524|GO:0016020
Stsc272086g00006 1156 SMART AAA_5 616 790 IPR003593 GO:0016887
Stsc272086g00006 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 803 IPR027417 -
Stsc272086g00006 1156 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 199 1129 - -
Stsc272086g00006 1156 SUPERFAMILY ABC transporter transmembrane region 888 1128 IPR036640 GO:0005524|GO:0016020
Stsc272086g00006 1156 FunFam ABC transporter C family member 5 850 1140 - -
Stsc272086g00006 1156 CDD ABC_6TM_ABCC_D2 886 1136 IPR044726 GO:0140359
Stsc272086g00006 1156 FunFam Multidrug resistance-associated protein 4 570 830 - -
Stsc272086g00006 1156 Pfam ABC transporter transmembrane region 890 1128 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272086g00006 1156 Pfam ABC transporter transmembrane region 273 539 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272086g00006 1156 Coils Coil 838 865 - -
Stsc272086g00006 1156 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 272 552 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272086g00006 1156 Gene3D ABC transporter type 1, transmembrane domain 254 570 IPR036640 GO:0005524|GO:0016020
Stsc272086g00006 1156 Gene3D ABC transporter type 1, transmembrane domain 850 1140 IPR036640 GO:0005524|GO:0016020
Stsc272086g00006 1156 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 888 1128 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272086g00006 1156 CDD ABCC_MRP_domain1 585 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272086g00006 Stsc-Chr272086 21909 25875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272086g00006 603 839 Calmodulin-binding Proteins AT2G36910 30.038 3.84e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272086g00006 - - gmx:100809063 1693.71