Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272086g00005 ATGATCTCTGTTGAGAGAATATTGCAATTCTCTAGCATACCAAGTGAAGCACCATTGATAATCCAAGATTGTAGGCCAGAACCAGAGTGGCCTACAGAAGGAAAAATTGAGCTTCAAAACATTCATATACAGTATGATCCGGCTGCTCCGATGGTTCTCAAAGGTGTCACTTGCACATTCCCGGGGCGAAAGAAAATCGGAGTTGTAGGGAGGACAGGGAGTGGAAAATCTACTCTGGTGCAAGCCCTTTTTCGGGTGGTGGAGCCTTTGGAAGGAAAGATACTCATAGATGGAGTACAGATTTCCAGGATTGGTCTGCAGGATTTAAGATCTAAGCTTGGTATAATTCCTCAAGACCCAACCTTGTTTCTAGGCACTGTTAGGACTAACTTGGATCCTCTAGAACAACATACAGATAAAGAACTTTGGGAGGTTCTCAAGAAATGCCATCTTGCTGAAATTGTAAGGCAGGATCCAAGACTTCTTGATGCACCAGTGGCTGAGAATGGAGAAAATTGGAGTGTTGGACAAAGGCAACTTGTTTGCCTTGCTAGGCTGCTATTGAAGAAGAGAAGGATTTTGGTTCTAGATGAGGCAACAGCATCCATTGACACTGCAACTGACAATTTAATTCAAAAGACTATTAGAGAAGAGACTAGTGAATGCACAGTGATTACTGTAGCACATAGAATCCCTACAGTTATTGATAATGACTTGGTTTTGGTCCTTGATGAAGGGACAATTGCGGAGTATGATGAACCAGACCGGTTGCTACAAAACAATACTTCATCTTTCTCAAAGTTGGTTTCGGAGTTTTTGAGTAGATCATCCCCCAAGTAG 840 0.4238 MISVERILQFSSIPSEAPLIIQDCRPEPEWPTEGKIELQNIHIQYDPAAPMVLKGVTCTFPGRKKIGVVGRTGSGKSTLVQALFRVVEPLEGKILIDGVQISRIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDKELWEVLKKCHLAEIVRQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSECTVITVAHRIPTVIDNDLVLVLDEGTIAEYDEPDRLLQNNTSSFSKLVSEFLSRSSPK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272086g00005 279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 270 IPR003439 GO:0005524
Stsc272086g00005 279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 262 IPR027417 -
Stsc272086g00005 279 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 270 - -
Stsc272086g00005 279 CDD ABCC_MRP_domain2 34 254 - -
Stsc272086g00005 279 FunFam ABC transporter C family member 3 19 271 - -
Stsc272086g00005 279 Pfam ABC transporter 53 201 IPR003439 GO:0005524
Stsc272086g00005 279 Gene3D - 19 272 IPR027417 -
Stsc272086g00005 279 SMART AAA_5 62 253 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272086g00005 Stsc-Chr272086 20508 21661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272086g00005 34 269 Calmodulin-binding Proteins AT2G36910 32.083 1.51e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272086g00005 - - gmx:100809063 481.87