Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272083g00008 ATGGTGTCGCTCAAGAAACTTGCGAAGAAGGTAAGAACCGTGGGTGGAGTAGTTGACCCCTCTCACCATGAGTGTTTGCTCAAGGAAGATCCACAGCAAAACAACTACCCCGAAGACGAAGACGATGACAACAGCATTAGCAGAACCCCGACTGGTTTTTTCGCGGTTTACATTGGCGAAGAGCGGCAGAGATATGTGGCTCCAACAAGCTACCTCTCTCACCCGTTGTTCAAGATGCTGCTGGAAAAGGCTCACCACGAATTCGGATTTGATCAGAGGAATGGATTGGTGGTTCCATGCACTGTCTCCACTTTTCAGCAAGTGATCAATGTTATAGAATGTAACAATGGCAAGTTTGACTTACAAAATATTTTTGCCGAATTTGTTTCATAA 393 0.4529 MVSLKKLAKKVRTVGGVVDPSHHECLLKEDPQQNNYPEDEDDDNSISRTPTGFFAVYIGEERQRYVAPTSYLSHPLFKMLLEKAHHEFGFDQRNGLVVPCTVSTFQQVINVIECNNGKFDLQNIFAEFVS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272083g00008 130 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 40 108 IPR003676 GO:0009733
Stsc272083g00008 130 MobiDBLite consensus disorder prediction 26 48 - -
Stsc272083g00008 130 Pfam Auxin responsive protein 40 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272083g00008 Stsc-Chr272083 60946 61338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272083g00008 50 115 Calmodulin-binding Proteins AT5G20810 56.061 3.10e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272083g00008 K14488 - gmx:100782364 174.481