Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272083g00001 ATGGAAAACATGCCACCAGGTTATCGTTTTTACCCTACTGAAGAGGAACTGATTTCATTCTATCTTCGGAACAAGCTTGAAGGAGTGAGGGAGGACATGAACCGGGTTATTCCAGTTCTTGACATATATGAATATAGTCCAAGCCAACTCCCACAAATATCAGGAGAGGCAAGTGTTGGAGATAGCGAGCAGTGGTTCTTTTTTATTCCGCGGCAAGAAAGTGAAGCTCGTGGAGGGAGGCCAAAGCGGCTCACAACAACCGGGTACTGGAAGGCCACTGGCTCCCCTAACCATGTTTTCTCTTCCGATAATCGTGTTATCGGAATGAAGAGAACGATGGTTTTCTACTGCGGGAGAGCTCCTAACGGAACTAAAACTGATTGGAAGATGAATGAGTATAAAGCCATTGACCTTCATCATCCCTCATCATCTTCTTCCTCCTCCAACAAGCCTGTTCCTATGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAGAAAACAAAGTGCTTAAGAGCATTTGATAGAAGACCACCTCCAAGAAGGGACACATATCCTCCTAACCAGAGCAACGCTTCATCAACATCATCCTTTGATCATCATCATCATCCCAATCAAACGGTGGAGAGATCATCAGGTGCAGCAAGCTCACCGGAGAGTGCGTGCTCCGAAGAACACGGTGGACGGTGTTCTCATCAAACGGAAGATGTGGAAAACAACGCAAATAATGAGCCATTTCTGGATTGGGAGAAAATCGATTGGTTCTTAGGATCTTCTTCAACGACGGAACCATGA 795 0.4541 MENMPPGYRFYPTEEELISFYLRNKLEGVREDMNRVIPVLDIYEYSPSQLPQISGEASVGDSEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVFSSDNRVIGMKRTMVFYCGRAPNGTKTDWKMNEYKAIDLHHPSSSSSSSNKPVPMLRQEFSLCRVYKKTKCLRAFDRRPPPRRDTYPPNQSNASSTSSFDHHHHPNQTVERSSGAASSPESACSEEHGGRCSHQTEDVENNANNEPFLDWEKIDWFLGSSSTTEP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272083g00001 264 MobiDBLite consensus disorder prediction 173 245 - -
Stsc272083g00001 264 ProSiteProfiles NAC domain profile. 4 167 IPR003441 GO:0003677|GO:0006355
Stsc272083g00001 264 SUPERFAMILY NAC domain 2 167 IPR036093 GO:0003677|GO:0006355
Stsc272083g00001 264 Gene3D NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Stsc272083g00001 264 MobiDBLite consensus disorder prediction 186 201 - -
Stsc272083g00001 264 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Stsc272083g00001 264 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272083g00001 Stsc-Chr272083 1143 2803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272083g00001 7 254 NAC Transcription Factor Family AT5G22380 51.807 2.44e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc272083g00001 NAM 9.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272083g00001 - - gmx:100777948 341.658