Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272082g00004 ATGGAGATCGCGCACGAGCTACTGCCTTCTCTCGACGGCAGCCCTATCGCCGCCGACACCGTTGCGAACTCTCCTCCGTCGTCGTCTTCCTCTTCCTCCCCTTCCTCTTCTGCCTCCTCTTTGGCTTCGTCGCCTCGCGCCGCTAAAGGAAAGGAGATCGAATCCACCGCATCGTCGGCAGCTCCGGCGCCGGCGGCTTCGCCTGCTTCCAGGTACGAAGACGATGACGAGGAGGAAGAGGACGTGTGCCGTATATGCAGGAACCCTGGCGACCCCGAGAATCCTCTCCGGTATCCTTGCGCGTGCAGCGGTAGTATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTGAATCACAGCAACGCTCGCCAATGCGAGGTTTGCAAGCATGCATTCTCCTTTTCTCCTGTTTATGCTGAGAATGCCCCAGCTAGGTTACCCTTTCAAGAATTTGTGGTTGGAATGGCAATGAAAGCTTGCCACGTTCTTCAATTCTTCCTGCGCCTGAGCTTTGTGCTATCTGTGTGGCTCCTAATCATACCTTTCATAACATTCTGGATATGGCGATTAGCTTTTGTAAGAAGTTTTGGTGAAGCCCAGAGGCTATTCCTAAGTCATTTATCAACAGCAGTTATTTTGACTGATTGCCTCCATGGCTTTCTGCTTTCTGCAAGCATTGTCTTCATATTTCTTGGGGCCACTTCTCTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGAGGACAGGATGCTGACAGAGAAGATGAAGTGGACAGAAACGGGGCTCGAATTGCTAGAAGAGCTCCTGGACAAGCTAATCGTAATATTAATGGTGATGGAAATGTTGAAGATGCTGGTGGAGCACAAGGAATTGCAGGAGCTGGACAAGTGATTAGAAGAAATGCTGAAAATGTTGCTGCACGTTGGGAGATGCAAGCAGCACGTCTTGAGGCCCATGTTGAGCAGATGTTTGATGGTCTAGATGATGCTGATGGAGCAGAGGATGTGCCCTTCGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTGCTTGCAAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCCTTCTCATTGGGTCGAATCATTCTCCATTATCTATCCTGGTTCTTTTCAACTGCTAGTGGTCCTGTAATGTCTGCCATGGCCCCACTTACTGATGCATCTCTTTCCCTAGCAAATATTACGTTAAAAAATGCATTAACGGCTGTCAAGAATTTGTCATCTGAGACTCAAGAAAGTGGATCAATTGGTCAGGTTGCAGAAATGCTGAAAGTGAATGCTAGTGGATTGAATGAAATGGCGAACAACATAAGTGAATCTGTCTCGTCTGATCTGTTGAAAGGAGGATCAATTGGAACTTCGAGGCTTTCAGATGTTACTACTTTAGCAATAGGATATATTTTTATATTGAGTCTAATTTTCTGCTACTTCGGTATCGTTGCTTTGATTCGTTACACGAAGGGTGAGCCTTTGACAATGGGGAGGTTCTATGGTATTGCTTCTATAGCAGAAACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACTATGGTCAAAGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCCCTGATGTGTGGATGGTGGCTTGATGTTTGCACCATACAGATGTTTGGGAAGACTATGGTTCACAGAGTTCAGTTCTTCTCTGCATCACCTTTAGCCAGTTCGCTAGTTCACTGGGTTGTGGGGATTGTGTATATGCTACAAATTAGCATATTTGTCAGCCTTCTCAGAGGGGTTTTGCGCAATGGAGTTCTGTACTTCCTTCGGGATCCAGCTGATCCAAACTACAATCCTTTCCGTGATCTGATTGATGATCCTGTCCACAAGCATGCTCGCAGGGTTCTATTATCTGTTGCAGTTTATGGCAGTTTGATTGTGATGCTGGTATTTTTGCCTGTGAAACTTGCTATGCGGATGGCTCCTTCTATTTTCCCACTTGACATATCGGTTTCTGATCCATTCACCGAAATACCAGCGGACATGCTTCTCTTTCAGATCTGTATCCCATTTGCTATTGAGCATTTTAAATTGCGGACAACTATTAAATCCCTGCTTCGATATTGGTTTACAGCAGTTGGTTGGGCACTTGGTTTGACTGATTTCTTACTGCCTAGACCTGATGACAATGGTGGTCAAGAAAATGGAAATGGGGAACCAGCTAGGCAAGACAGGCTACAGGTTGTACAAGCAGGGGTGCACGATCAGGGCATGGTGGCCTTTGCGGGGGATGATTTGAACAGGGTCATTAATGCAGCGGGAGATCCAAATGCTGCAGAAGATTATGATAATGAGGAACAATCTGATTCTGATTATGCTTTTGTGCTTAGCATTCTTCTACTACTGGTGATAGCTTGGATGACCCTGCTTGTATTCAACTCTGCCCTGATAGTTGTGCCAATTTCACTTGGACGGGCACTTTTCAATTCTATTCCGCGTCTTCCAATAACTCATGGCATTAAGTGCAATGATTTGTATGCATTCATAATTGGAAGCTATGTGATTTGGACTGCTGTTGCTGGAGTTAGATACTCAATTGAGCAAATAAAAAAAAGGAGGGCCTCAGTTTTGTTTGGCCAAATATGGAAGTGGTGTGCCATCGTGGTGAAGAGTTCTGCACTTTTGTCCATATGGATATTTGTCATCCCTGTGCTAATTGGTCTTCTCTTTGAGCTTCTGGTCATCGTGCCAATGAGAGTTCCAGTGGATGAAAGTCCAGTATTCCTCCTCTATCAAGACTGGGCTTTAGGTCTTATATTCCTAAAGATATGGACAAGATTGGTTATGTTGGACCACATGATGCCTCTTGTGGATGATAGCTGGCGAGTAAAGTTTGAGAGAGTGAGAGAAGATGGTTTCTCCAGGCTTCAAGGCCTTTGGGTTCTTCGGGAGATTGTACTTCCGATCATAATGAAACTATTGACAGCATTGTGTGTACCCTATGTTCTTGCCAGAGGCGTCTTTCCGGTACTTGGGTATCCTTTGGTGGTTAATTCTGCTGTATATCGGTTTGCATGGTTGGGATGCCTCTGTTTCAGTTTCTTGTGCTTTTGTGCCAAGAGATTTCATGTTTGGTTTACAAATCTCCATAATTCAATACGCGATGACCGGTATCTCATCGGCCGGAGGTTGCATAACTTTGGAGAACATGTTGAGAAGACAAATGAAGCAGGAGCTTCTACAGGCGTGCCAGATACAATTTTATCTGACCACGAAGCAGATGTTGGACTTAGGCTGCGGCACATAAATCAACAGGCAGGCTGA 3369 0.4512 MEIAHELLPSLDGSPIAADTVANSPPSSSSSSSPSSSASSLASSPRAAKGKEIESTASSAAPAPAASPASRYEDDDEEEEDVCRICRNPGDPENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARIARRAPGQANRNINGDGNVEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTASGPVMSAMAPLTDASLSLANITLKNALTAVKNLSSETQESGSIGQVAEMLKVNASGLNEMANNISESVSSDLLKGGSIGTSRLSDVTTLAIGYIFILSLIFCYFGIVALIRYTKGEPLTMGRFYGIASIAETIPSLFRQFLAAMKHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDNGGQENGNGEPARQDRLQVVQAGVHDQGMVAFAGDDLNRVINAAGDPNAAEDYDNEEQSDSDYAFVLSILLLLVIAWMTLLVFNSALIVVPISLGRALFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIKKRRASVLFGQIWKWCAIVVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDDSWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEHVEKTNEAGASTGVPDTILSDHEADVGLRLRHINQQAG 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272082g00004 1122 CDD RING_CH-C4HC3_MARCH6 82 131 - -
Stsc272082g00004 1122 ProSiteProfiles Zinc finger RING-CH-type profile. 75 136 IPR011016 GO:0008270
Stsc272082g00004 1122 Coils Coil 300 320 - -
Stsc272082g00004 1122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 141 IPR013083 -
Stsc272082g00004 1122 ProSiteProfiles Zinc finger RING-type profile. 83 130 IPR001841 -
Stsc272082g00004 1122 MobiDBLite consensus disorder prediction 20 44 - -
Stsc272082g00004 1122 PANTHER SSM4 PROTEIN 65 1085 - -
Stsc272082g00004 1122 Pfam RING-variant domain 83 129 IPR011016 GO:0008270
Stsc272082g00004 1122 SMART ringv_2 82 130 IPR011016 GO:0008270
Stsc272082g00004 1122 MobiDBLite consensus disorder prediction 1 76 - -
Stsc272082g00004 1122 FunFam Probable E3 ubiquitin ligase SUD1 68 141 - -
Stsc272082g00004 1122 SUPERFAMILY RING/U-box 77 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272082g00004 Stsc-Chr272082 20908 27387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272082g00004 14 135 C3H Transcription Factor Family AT4G00335 28.682 3.31e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272082g00004 K10661 - gmx:100811171 1975.67