Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272082g00003 ATGGCTCAGGTTCAAGTTCCGCCTCAGAATGCGATTGCGGGTCCCAACGGAGGAGCAGCTGGTGGTGCTACCGGAAACCAGTTCGTGACGACGTCACTTTACGTCGGGGATCTGGACCCGACCGTGACGGAGTCGCAGTTGTATGACTTGTTCAACCAATTGGGTCAGGTTGTGTCCGTTAGGGTTTGCACCGACCTCACCAGCCGCAGATCGCTCGGTTACGGTTATGTCAATTACAGCAACCCACAAGATGCTGCCAGAGCACTTGATGTTCTGAACTTCACTCCTCTGAATAACAAGCCTATCCGCATTATGTATTCACATCGTGATCCCAGTATTCGTAAAAGTGGTGCTGGAAACATATTTATTAAGAATTTGGACAAGGCAATTGACCACAAGGCATTGCATGATACATTTTCTTCCTTTGGGAATATCCTTTCCTGCAAGGTTGCTACGGACTCATCTGGCCAGTCAAAAGGGTATGGGTTTGTGCAATTTGATACTGAAGAAGCTGCTCAGAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCGTTCCTTCGCAAGCAAGAGAGAGAAACTGCAACTGACAAGGCAAAATTTAACAATGTGTTTGTGAAGAACCTATCTGAGTCAACCACGGATGAGGATTTGAACAAGGTTTTTGGTGAATTTGGGACCATTACCAGTGCTGTTGTGATGAGGGATGGTGATGGGAAATCCAAGTGCTTTGGATTTGTTAACTTTGAGAATCCTGAAGATGCTGCTAGGGCTAGCATGAAAGAAGCTGCTGACAAATACCAGGGGGCAAACTTGTACATCAAAAACTTAGATGATACCATCGGAGATGATAAACTTAAGGAGCTGTTCTCCCCTTTCGGTACCATTACCTCTTGCAAGGTTATGAGGGACCCCAATGGTATCAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTCCCGAGGAGGCCTCTAGAGCTCTCTTGGAGATGAATGGAAAAATGGTGGTAAGCAAACCCCTCTATGTCACTCTTGCCCAGCGGAAGGAAGATAGAAGAGCTAGATTGCAGGCTCAGTTTGCTCAAATGCGACCCATTGCAATGGGACCCACTGTTGGTCCTCGGGTGCCAATGTATCCCCCTGGTGGTCCAGGTATTGGTCAACAAATATTCTACGGTCAGGGCCCTCCTGCCATTATTCCTTCCCAGCCTGGGTTTGGCTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTTCCAAATTTCTTTGTGCCGATGGTTCAGCAAGGACAGCAGGGGCAACGTCCTGGAGGAAGACGTGCAGGTGGAGTCCAGCAGTCCCAGCATCCAGTCCCAATGATGTCGCCTCAGATGCTTCCTAGGGGACGCATGTATCGTTATCCACCCGGTGGTAGGGTTCCTGATGTTCCCATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGGGCGGGATGCCTATGCGTGATGCAACAATCTCCCAGCAAATTCCCATTGGGGCTTTGGCTACTGCGCTGGCAAATGCTTCTCCAGAGCAGCAGAGAACGATGCTGGGTGAAAATCTCTACCCTCTCGTGGAACAGTTGGAGCCTGATAATGCTGCCAAGGTGACAGGAATGCTCCTGGAGATGGACCAGACTGAGGTTCTGCACTTGCTCGAGTCACCAGAAGCCCTGAAGGCGAAGGTGGCTGAGGCAATGGACGTCTTAAGGAATGTTGCACAGCAGCAGCAGACTGGCGGTGCTGCTGACCAGCTTGCTTCATTATCACTCAATGACAACCTTGTTTCTTGA 1854 0.4946 MAQVQVPPQNAIAGPNGGAAGGATGNQFVTTSLYVGDLDPTVTESQLYDLFNQLGQVVSVRVCTDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVATDSSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERETATDKAKFNNVFVKNLSESTTDEDLNKVFGEFGTITSAVVMRDGDGKSKCFGFVNFENPEDAARASMKEAADKYQGANLYIKNLDDTIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPIAMGPTVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGGVQQSQHPVPMMSPQMLPRGRMYRYPPGGRVPDVPMPGVAGGMFSVPYDVGGMPMRDATISQQIPIGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQTGGAADQLASLSLNDNLVS 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272082g00003 617 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 518 595 IPR002004 GO:0003723
Stsc272082g00003 617 FunFam Polyadenylate-binding protein 18 116 - -
Stsc272082g00003 617 FunFam Polyadenylate-binding protein 514 596 - -
Stsc272082g00003 617 Gene3D - 24 119 IPR012677 -
Stsc272082g00003 617 PANTHER RNA BINDING PROTEIN 30 93 - -
Stsc272082g00003 617 CDD RRM2_I_PABPs 117 193 IPR045305 -
Stsc272082g00003 617 CDD RRM4_I_PABPs 277 355 - -
Stsc272082g00003 617 SMART rrm2_1 279 351 IPR003954 GO:0003676
Stsc272082g00003 617 SMART rrm2_1 32 105 IPR003954 GO:0003676
Stsc272082g00003 617 SMART rrm2_1 120 192 IPR003954 GO:0003676
Stsc272082g00003 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Stsc272082g00003 617 SUPERFAMILY RNA-binding domain, RBD 274 376 IPR035979 GO:0003676
Stsc272082g00003 617 SUPERFAMILY PABC (PABP) domain 459 611 IPR036053 GO:0003723
Stsc272082g00003 617 SMART rrm1_1 279 351 IPR000504 GO:0003723
Stsc272082g00003 617 SMART rrm1_1 32 105 IPR000504 GO:0003723
Stsc272082g00003 617 SMART rrm1_1 120 192 IPR000504 GO:0003723
Stsc272082g00003 617 SMART rrm1_1 211 276 IPR000504 GO:0003723
Stsc272082g00003 617 FunFam Polyadenylate-binding protein 117 200 - -
Stsc272082g00003 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Stsc272082g00003 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 348 IPR000504 GO:0003723
Stsc272082g00003 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 266 IPR000504 GO:0003723
Stsc272082g00003 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Stsc272082g00003 617 FunFam Polyadenylate-binding protein 266 366 - -
Stsc272082g00003 617 CDD RRM1_I_PABPs 32 111 IPR034364 -
Stsc272082g00003 617 Pfam Poly-adenylate binding protein, unique domain 526 590 IPR002004 GO:0003723
Stsc272082g00003 617 SUPERFAMILY RNA-binding domain, RBD 206 266 IPR035979 GO:0003676
Stsc272082g00003 617 MobiDBLite consensus disorder prediction 440 471 - -
Stsc272082g00003 617 Gene3D - 195 270 IPR012677 -
Stsc272082g00003 617 Gene3D - 271 363 IPR012677 -
Stsc272082g00003 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Stsc272082g00003 617 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Stsc272082g00003 617 Gene3D - 514 597 - -
Stsc272082g00003 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 355 IPR000504 GO:0003723
Stsc272082g00003 617 Gene3D - 120 192 IPR012677 -
Stsc272082g00003 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Stsc272082g00003 617 SMART poly_2 530 593 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272082g00003 Stsc-Chr272082 9858 15051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272082g00003 30 616 Eukaryotic Initiation Factors Gene Family AT1G49760 71.090 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272082g00003 K13126 - gmx:100780329 1049.27