Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272081g00006 ATGGAAGACAAAGCAATGGGAAAAAATGAGACCAAGGATTCAATGGATGTTTCTCCGGAACCATCAAATTCACAAGACAATGTTGAAGACTGCGAGATGAATGGTGCGAAAGAGAACGTGAGTTGTACTTGTGATTGCGGCGGTAGTAGTAGTAAGTGTGCGTATGTGACTGCGGATGATATTACCAACCAGACGTTTGAAACATCGGATGCAGCCTATAATTTATATGTAAGCTACGCGAGGTGTATTGGCTTTGAAGTTCGTAAGGGTGATGCAGCACGCGAAAAGGGTGGAACTCTTTGTAGAAGGCGGTTTTTTTGCAATAAGGAAGGAAAGAGACATGAGAAATTCATCTCTAATCCTGACAGGAAAAGGGAGCATAAAGCTTTGACTCGAACTGGTTGTGAAGCCATGCTTTCGGTGTACTTTGATACTAAGTCTTCAATTTGGAGGGTAAGAAGATTAGTTGAGGAGCACAACCATGATCTAGTCCCCCAATGTTTGGTACATCTCATTCCAAATCATCGAGGAATGACCGAGGCTCAAAAAGCACAGGCTAACACCATGCATGATAATGGTCTCCCAACCTCTAAAATAATGGGACTAATGGTAGGACAAGCAGGTGGTTATGCTAACATCGGGTTCACAAAGAAGGACTTAGATAACCACATTGGAAGATCTCGACATGCAAAGCTCATTGGAGGGGATGCTAATGCAACAATAAGCTATCTACTTGGGAAGGCAGATGTTGATCCCATGGCCGTGGCAAAGTACAGTCCTACTAGTGAAAATCGGCTAGCAAACTTGTTTTGGGCAGATGGAATTTCTAGGGCCGACTATCAATGCCTTGGAGATGTGCTTGCATTCGATACGACTTATAAAAAGAATAAGTACAGGAAGCCGTTGGTAATTTTCTCGGGTTCTAATCATCATTGCCAGACATGTATATTTGGCTTTGCCTTGGTAGAGAATGAAAAAACAGCAACATATACCTGGTTGTTGGAAAACTTTATGGAAATAACGTTGAACAAATCTCCTAATGTTGTTATCACAGATGGCGATGAGGCAATGAAAGCTGCAATTCGTAAAGTCTTCCCGAATGCAACACACCGATTATGTGGTTGGCATATTCAACAGAATGTAACGGCAAAAATTAAAAATAAATCTTTTGCCAAAGATTTCAGAAAATGTTTGTATGTTCCATGGCATCCGGACGAATTTGAAGATTTTTGGGTGACTATGCTGCAACAATATGGGCTGGAAGAAAATGTCTGGGTTCATCAGGAATATGAAAAGAGGAAATCCTGGGCATGCGCTTATCTGCGTGATAAATTCTGCGCAGGTTTTAGAACGACATCCAGGTGTGAGGGGATAAATAATTTCATCAAGAGGTTTGTGCACCAACGCCAAAGTCTTCTAGAGGTTGTCCAAGGTCTTGAACATGCTGTAAGAGACTATAGGCAAATTGAATTAGTTTCTCAATTTAAGTCTGTGTATGAGGAGCCCGTACTAACTACTGGTCTAAAATCACTAGAGCTTTGTGCTGCTAATTATTACACAAGGGAAATTCTTGCAAAAGTCAAAGAGGAGATTCAACGTGTGGTGGGATTGGATATAGTAGAAGAAGAAAATATATCTACTCTTATTGTATTAATGGTAAAGGAGTGTGAGGGGAGGCAACGCGTATATAGAGTAGTATATGATCTCAACACTGAGAACATGGAGTGTGTATGTAGTAGGTGGAGTAGTGAAGGATATCCTTGTTCCCACATGTTCTGTGCTATGAAAAGATTGGGTTTACAGAAGTTGCCAGAGAGTCTTCTTTTAAAAAGATGGTCCAAGGATGCCAAAAAATATTCTGATGAAATCCTTGTTGGAAGCACTGTGCAGGACATGGAAAGAGCTTTTTTAATGCGCTACGGTGCATTGTCAGTGGCAACAGCGTGGATGGTCTTCCTAGGAGCCCAAAATGGTCCTTCGTTCCATGATACCATTAATGAAGTCTACCGTTTGACCAATGCACTAGAACAAAAGTCCGGCCTAAAAAAGCAAGCAACCAAATCTCTCGCGCAGAACTTAGTTGATGACCCTTTAGTGGTCAAGACAAAAGGAGCACCCAAAGGAAGAAAAGAGAGAGGAAAAAGGAAGTGCACGGAGTGTAACAATGCTGGTCATTCAAAGAGGAATTGTCGTGCAAGAAATGTCAAAAACATACCGAGCGAAGGGGATGGCAGTGGCTTGCAGGCTGGCTCTGATATGGCAAAGGATAATCCTAAAGAACCCATGGATTCTCAAGAAACCTCTGTAATGCCAAGTGCAGAAGTAGATGAATCTTCTACAAAAGAAGGGATTGATTTAAGTAGTTCTGAATTGAATAATAGTGAAGAGGTTCCCAAACCACCATTTGGGAGCCACCAGTGGTTATTACAGGTTATGCAACAAGGACAATATCCATCTTTTGGCGGAACGCAGTAG 2475 0.417 MEDKAMGKNETKDSMDVSPEPSNSQDNVEDCEMNGAKENVSCTCDCGGSSSKCAYVTADDITNQTFETSDAAYNLYVSYARCIGFEVRKGDAAREKGGTLCRRRFFCNKEGKRHEKFISNPDRKREHKALTRTGCEAMLSVYFDTKSSIWRVRRLVEEHNHDLVPQCLVHLIPNHRGMTEAQKAQANTMHDNGLPTSKIMGLMVGQAGGYANIGFTKKDLDNHIGRSRHAKLIGGDANATISYLLGKADVDPMAVAKYSPTSENRLANLFWADGISRADYQCLGDVLAFDTTYKKNKYRKPLVIFSGSNHHCQTCIFGFALVENEKTATYTWLLENFMEITLNKSPNVVITDGDEAMKAAIRKVFPNATHRLCGWHIQQNVTAKIKNKSFAKDFRKCLYVPWHPDEFEDFWVTMLQQYGLEENVWVHQEYEKRKSWACAYLRDKFCAGFRTTSRCEGINNFIKRFVHQRQSLLEVVQGLEHAVRDYRQIELVSQFKSVYEEPVLTTGLKSLELCAANYYTREILAKVKEEIQRVVGLDIVEEENISTLIVLMVKECEGRQRVYRVVYDLNTENMECVCSRWSSEGYPCSHMFCAMKRLGLQKLPESLLLKRWSKDAKKYSDEILVGSTVQDMERAFLMRYGALSVATAWMVFLGAQNGPSFHDTINEVYRLTNALEQKSGLKKQATKSLAQNLVDDPLVVKTKGAPKGRKERGKRKCTECNNAGHSKRNCRARNVKNIPSEGDGSGLQAGSDMAKDNPKEPMDSQETSVMPSAEVDESSTKEGIDLSSSELNNSEEVPKPPFGSHQWLLQVMQQGQYPSFGGTQ 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272081g00006 824 MobiDBLite consensus disorder prediction 700 807 - -
Stsc272081g00006 824 MobiDBLite consensus disorder prediction 1 15 - -
Stsc272081g00006 824 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Stsc272081g00006 824 SMART 26again6 574 601 IPR006564 GO:0008270
Stsc272081g00006 824 PANTHER OS01G0519700 PROTEIN 60 750 - -
Stsc272081g00006 824 ProSiteProfiles Zinc finger SWIM-type profile. 563 599 IPR007527 GO:0008270
Stsc272081g00006 824 MobiDBLite consensus disorder prediction 702 722 - -
Stsc272081g00006 824 MobiDBLite consensus disorder prediction 16 30 - -
Stsc272081g00006 824 Pfam MULE transposase domain 286 380 IPR018289 -
Stsc272081g00006 824 ProSiteProfiles Zinc finger CCHC-type profile. 715 731 IPR001878 GO:0003676|GO:0008270
Stsc272081g00006 824 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272081g00006 Stsc-Chr272081 60452 64685 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc272081g00006 MULE 9e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272081g00006 - - ahf:112717474 1216.83