Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272081g00005 ATGTCTCCAACAGGATCATCAAGATGGAGCCCTACAACTGAACAACTAATGATCTTGGAGGAACTTTATAGGAGTGGGATTAGAACTCCAAGTGCTTCTCAGATTCAACAGATCACAACTCATCTTTCTTTCTACGGAAGGATTGAAGGCAAGAATGTCTTCTACTGGTTTCAAAATCATAAGGCTAGGGATAGACAGAAGCTTAGGAGAAAGCTTAACAAACAGCTCCAGCTACAGCAGCAACTTCAGCTCCATAGTAGTAGTGACCATCATCATCACTTCAACCACCAAGATTTCAGTAACCGTTTTGTTCCTGCTGCTTTTGGTTATCCTCCTCCTCCTCCTTCTTCTTCGCCTGCTTCCAAACAAGTTCCCTTCTATGCCACAACTACAACTGGTTTGTTTCTTCAGGGAGGAGGAGTAGCTGCATACGCATCACAAGACGGGGCCATGAATTGCAAGTGTAGTGTGCATCATAACTCAGAAAGTTTGTTATTGGAGAAGAATAATAAAGAGATGAGATTCTTCAACAATAACTATGGTTGGACTCTTGGTGGTGGCGATCTTAATTATCATCATCATCATCAAGAATCACCATGTTGCACTACTAATAATCAACCTCTCCAGACTCTTGACCTCTTTCCAGTCACATCCACTACCAGAATCAAAGAAGATTGCACCAAGGCTCTGATGTCTGATCAGTGGTAG 708 0.4237 MSPTGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLNKQLQLQQQLQLHSSSDHHHHFNHQDFSNRFVPAAFGYPPPPPSSSPASKQVPFYATTTTGLFLQGGGVAAYASQDGAMNCKCSVHHNSESLLLEKNNKEMRFFNNNYGWTLGGGDLNYHHHHQESPCCTTNNQPLQTLDLFPVTSTTRIKEDCTKALMSDQW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272081g00005 235 Gene3D - 3 67 - -
Stsc272081g00005 235 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 226 IPR044555 GO:0003700|GO:0099402
Stsc272081g00005 235 CDD homeodomain 8 67 IPR001356 GO:0003677
Stsc272081g00005 235 ProSiteProfiles 'Homeobox' domain profile. 2 67 IPR001356 GO:0003677
Stsc272081g00005 235 FunFam WUSCHEL-related homeobox 4 6 73 - -
Stsc272081g00005 235 Pfam Homeodomain 7 66 IPR001356 GO:0003677
Stsc272081g00005 235 SMART HOX_1 4 71 IPR001356 GO:0003677
Stsc272081g00005 235 SUPERFAMILY Homeodomain-like 5 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272081g00005 Stsc-Chr272081 53932 55283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272081g00005 1 74 Wox Gene Family AT2G28610 83.784 6.37e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc272081g00005 Homeodomain 8.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272081g00005 - - gmx:102663963 198.749