Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272080g00006 ATGGGAACAACTCTGAGTTTTCCCAAAACTGAAAAGTTTTCTGAAGACGGCGAGAACGACTGTCTTAGATATGGTTTGTCATCGATGCAAGGATGGCGGGCATCAATGGAAGATGCACATGCTGCACTTCTTGATGTGGATGCATCCACTTCATTTTTCGGTGTATATGATGGTCATGGAGGTAAGGCAGTTGCAAAGTTTTGTGCTAAGTACCTTCACCTTCAGGTGCTTAAGAGTAAAGCATACCTTGATGGAGATATAGCAGCTTCTCTTCAGAAATCTTTCTTCAGAATGGATGAGATGATGCGGGGTCAAAGAGGTTGGAGGGAATTATCAGCCTTGGGTGATAAGAATATGAACAAGTTTAATGGGATGATGGAAGGTTTGATTTGGTCTCCACGAAGCAACAACAATGGTAATGCCCAAAGTGATGATTGGACTTTTGAGGAGGGTCCCCATTCTGATTTTGCTGGACCAACTTCTGGAAGCACTGCTTGTGTAGCAATTGTTAAAGACAACCAACTTTTCATTGCAAATGCCGGTGATTCGCGTTGTGTTTTATCTAGGAATGGTCAGGCATTCAATTTGACAAGAGACCACAAGCCTGATCTTGCAATTGAGAAGGAAAGAATCTTAAAAGCTGGCGGTTTTATTCACGCAGGACGAGTTAATGGGAGTTTAAATCTTGCAAGAGCTATAGGTGATGTGGAATTTAAGCAGAATAAATTTCTCTCAGTTGAAACACAGATTGTTACTGCAAATCCAGATTTAAACACTGTTGATCTTTGTGACGAAGATGAATTTATGGTGCTCGCGTGTGATGGCATATGGGACTGTATGTCAAGTCAACAATTGGTAGATTTCATTCGTCAAGAACTGCTCTTGGAAACAAAACTTTCTGCGGTGTGCGAACGAGTACTAGATCGTTGTTTGGCACCGACAATTACTATTGGCGAGGGATGTGATAACATGACCATGATATTGGTGCAGTTCAGAAAACCTTCCCAGTTCATGCAGCAACAGAAAAGGAACACTCTTCAAATGAAGCAAAACTAA 1056 0.4157 MGTTLSFPKTEKFSEDGENDCLRYGLSSMQGWRASMEDAHAALLDVDASTSFFGVYDGHGGKAVAKFCAKYLHLQVLKSKAYLDGDIAASLQKSFFRMDEMMRGQRGWRELSALGDKNMNKFNGMMEGLIWSPRSNNNGNAQSDDWTFEEGPHSDFAGPTSGSTACVAIVKDNQLFIANAGDSRCVLSRNGQAFNLTRDHKPDLAIEKERILKAGGFIHAGRVNGSLNLARAIGDVEFKQNKFLSVETQIVTANPDLNTVDLCDEDEFMVLACDGIWDCMSSQQLVDFIRQELLLETKLSAVCERVLDRCLAPTITIGEGCDNMTMILVQFRKPSQFMQQQKRNTLQMKQN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272080g00006 351 Gene3D - 1 332 IPR036457 -
Stsc272080g00006 351 ProSiteProfiles PPM-type phosphatase domain profile. 23 331 IPR001932 -
Stsc272080g00006 351 PANTHER PROTEIN PHOSPHATASE 2C 20 330 IPR015655 GO:0004722|GO:0006470
Stsc272080g00006 351 SMART PP2C_SIG_2 28 331 IPR001932 -
Stsc272080g00006 351 CDD PP2Cc 23 331 IPR001932 -
Stsc272080g00006 351 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Stsc272080g00006 351 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Stsc272080g00006 351 Pfam Protein phosphatase 2C 142 314 IPR001932 -
Stsc272080g00006 351 SUPERFAMILY PP2C-like 3 333 IPR036457 -
Stsc272080g00006 351 SMART PP2C_4 12 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272080g00006 Stsc-Chr272080 25125 29937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272080g00006 1 335 PP2C-type Phosphatase Gene Family AT2G25070 74.030 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272080g00006 K17499 - gmx:100787778 570.466