Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00012 ATGATAATGATGAAGATGAAGATGAACACAGAAATGTCACAAAGTGAAGATGGAGAGATCAACATGGCAGCTTGGATTCTTGGTGTTAAAAATCTATCAATTCAACCATATCCTCTTCCTTCTTTAGGTCCCCATGATGTCAAAATTAGAATTAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACTATAAGACTATGAGATGTGCAAATTTTATTGCCAACAAGCCTATGGTTCTGGGACATGAGTGTGCTGGAATCATACAAGAACTTGGCACTCAAGTTCAATCTCTTTCAGTAGGAGATAGGGTAGCCTTAGAGCCTGGAATCAGTTGCCAATCATGCAGTTTCTGCAAAGGTGGCCGCTACAACCTCTGTCGCGGCATGAAATTTTTCGGATCAGCATCAACTCACGGTTCTCTTGCCAATATGGTGGTGCATCCTGCCAATCTGTGCTTCAAGCTACCTGACAATGTGAGCTTGGAGGAAGGAGCCATGATTGAGCCACTCAGTGTTGGAGTGCATGCGTGTCGCCGTGCGAATATCGGTCCGGACACAAATGTACTGATCATAGGAGCAGGACCAATTGGCCTTGTTGTATCACTTGCTGCCAGGGCATTTGGATCACCAAGAATTGTCATGGTTGATGTTGACAACACTCGTTTATCAATTGCAAAAGATCTTGGTGCAGATGAAACTATCCTGGTTTCAACTAGTATCCAGGACATGGAAAATGAAGTGGTGCAAATCCAAAATGCCATGGGATGTAAGATTGATGTGAGTTTTGATTGTGTTGGCTACAATAAAACCATGTCCACAGCACTCAATGCCACCACCTCTGGAGGCAAAGTTTGCCTCATTGGATTAGCTCAAACTGAGATGACACTTCCCCTTACTCCGGCCGCCGCGAGGGAGGTTGATGTAATTGGGATATTCAGATACAAAAACACTTGGCCACTGTGCATTGAGCTGTTAAGAACTGGGAAGATTGACATCAAAGCATTGATAAGTCACAGGTTTGGATTCTCACAGAAAGAGCTGGAAGAAGCCTTTGAGACCAGTGCTCAAGGGGGTACTGCTATTAAGATCATGTTCAATCTCTAG 1104 0.4366 MIMMKMKMNTEMSQSEDGEINMAAWILGVKNLSIQPYPLPSLGPHDVKIRIKAVGICGSDVHYYKTMRCANFIANKPMVLGHECAGIIQELGTQVQSLSVGDRVALEPGISCQSCSFCKGGRYNLCRGMKFFGSASTHGSLANMVVHPANLCFKLPDNVSLEEGAMIEPLSVGVHACRRANIGPDTNVLIIGAGPIGLVVSLAARAFGSPRIVMVDVDNTRLSIAKDLGADETILVSTSIQDMENEVVQIQNAMGCKIDVSFDCVGYNKTMSTALNATTSGGKVCLIGLAQTEMTLPLTPAAAREVDVIGIFRYKNTWPLCIELLRTGKIDIKALISHRFGFSQKELEEAFETSAQGGTAIKIMFNL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00012 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 331 IPR036291 -
Stsc272079g00012 367 Gene3D - 172 312 - -
Stsc272079g00012 367 Gene3D - 30 354 - -
Stsc272079g00012 367 FunFam Sorbitol dehydrogenase 172 312 - -
Stsc272079g00012 367 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 81 95 IPR002328 GO:0008270|GO:0016491
Stsc272079g00012 367 Pfam Zinc-binding dehydrogenase 195 325 IPR013149 -
Stsc272079g00012 367 Pfam Alcohol dehydrogenase GroES-like domain 44 155 IPR013154 -
Stsc272079g00012 367 CDD sorbitol_DH 23 366 IPR045306 GO:0016616
Stsc272079g00012 367 PANTHER SORBITOL DEHYDROGENASE 21 367 - -
Stsc272079g00012 367 SUPERFAMILY GroES-like 22 193 IPR011032 -
Stsc272079g00012 367 SMART PKS_ER_names_mod 28 365 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00012 Stsc-Chr272079 56012 58820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00012 24 300 Monolignol Biosynthesis Gene Families AT4G37980 26.897 5.02e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00012 K00008 K19635 cave:132181067 585.104