Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00011 ATGGGGAAAGGAGGGATGTCAATAGATGATAATCAAGGAGAAGAGCAGAACATGGCTGCTTGGCTTGTTGCCATTAACACTCTCAAGATTCAGCCATTCAACCTTCCTCCTCTTGGACCCCATGATGTCAGAGTTAGAATGAAAGCTGTTGGTATCTGTGGAAGTGATGTTCATTACCTCAAGACACTGAGATGTGCACACTTTGTAGTTGAAGAGCCAATGGTGATTGGTCATGAGTGTGCTGGGATCATTGAAGAAGTTGGCAGTGAGGTCAAGACCTTGGTGCCCGGTGACCGTGTGGCGATTGAGCCAGGAATCAGTTGCTGGCGTTGCGACCACTGCAAGCAGGGCCGCTATAACTTGTGCCCTGATATGAAGTTCTTTGCCACTCCTCCAGTTCATGGCTCCCTTGCTAATCGGATAGTGCATCCAGCAGACCTATGTTTTAAACTACCAGACAATGTAAGCTTAGAGGAGGGGGCAATGTGCGAGCCCTTGAGCGTCGGTGTTCATGCTTGTAGGCGAGCTGAGATTGGCCCAGAAACAAATGTGTTGATCATGGGAGCAGGACCTATAGGACTTGTTACAATGCTTGCAGCTCGAGCTTTTGGTGCGCCTAGGATTGTCATCGTGGATGTCGATGACCATCGTTTATCTGTTGCAAAATCTCTTGGTGCTGATGATATTGTCAAAGTCTCAACAAACTCTCAGGATGTTCCTGGAGAAGTTGAACAGATACACAAGGCTATGGGAGCTGGTGTAGATGTTACATTTGACTGTGCTGGTTTCAACAAAACCATGACTACAGCACTGAGTGCTACTAAGCCAGGTGGTAAAGTTTGCTTAGTGGGAATGGGTCATTCAGAAATGACTGTTCCACTCACCCCAGCTGCTGCAAGGGAAGTTGATGTGATTGGTATATTCCGGTATAAGAACACTTGGCCTCTGTGTCTTGAGTTTCTAAGAAGTGGCAAAATCGATGTGAAGCCTCTCATAACACACAGGTATGGATTCTCTCAGAAGGAAGTGGAAGAAGCATTTGAAACGAGTGCTGCTGGTGGTAATGCTATTAAGGTCATGTTCAATCTCTAG 1092 0.4661 MGKGGMSIDDNQGEEQNMAAWLVAINTLKIQPFNLPPLGPHDVRVRMKAVGICGSDVHYLKTLRCAHFVVEEPMVIGHECAGIIEEVGSEVKTLVPGDRVAIEPGISCWRCDHCKQGRYNLCPDMKFFATPPVHGSLANRIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRAEIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDHRLSVAKSLGADDIVKVSTNSQDVPGEVEQIHKAMGAGVDVTFDCAGFNKTMTTALSATKPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRYGFSQKEVEEAFETSAAGGNAIKVMFNL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00011 363 PANTHER SORBITOL DEHYDROGENASE 16 363 - -
Stsc272079g00011 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Stsc272079g00011 363 Gene3D - 27 349 - -
Stsc272079g00011 363 Pfam Alcohol dehydrogenase GroES-like domain 40 151 IPR013154 -
Stsc272079g00011 363 Gene3D - 168 308 - -
Stsc272079g00011 363 FunFam Sorbitol dehydrogenase 168 308 - -
Stsc272079g00011 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 327 IPR036291 -
Stsc272079g00011 363 SUPERFAMILY GroES-like 18 189 IPR011032 -
Stsc272079g00011 363 Pfam Zinc-binding dehydrogenase 191 321 IPR013149 -
Stsc272079g00011 363 CDD sorbitol_DH 19 362 IPR045306 GO:0016616
Stsc272079g00011 363 SMART PKS_ER_names_mod 23 361 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00011 Stsc-Chr272079 52720 55201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00011 30 296 Monolignol Biosynthesis Gene Families AT4G37980 28.058 3.44e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00011 K00008 - gmx:100791559 674.47