Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00010 ATGGACCTTGATGGGGGCAACAAGCGCGTGTACCAACGATTAGGTGGACCCTCAGGGGATTCGAAGCATCAGAAAGTGTGTTATCACTGGCAAGCTGGCAAGTGCAATCGCCATCCATGCCCTTTTCTTCATAGCGAGTTGCCAACTCCCAATGTTAATGGTACCTCGTCGAAGAGGCCTCATGGTTCTGCTGACAATTCCGGATTTTCGGGACATCGCCGGACCCCTCATTTCAACAACACATGGGGTCGCGGTGGCGGTCGTGGCGTCGGCGGCCGCGGCGCGGGTGGTGGAGTTGTTGGTGGTGATATGAGTGTAGTTAGGAAGGCTGATAAGGTTTGTAATTATTGGATTCAGGGGAATTGTAATTTTGGTGAGAGGTGTAAGTTCCTTCATTCTTGGAATACAGGGGATGGTTTTTCTATGTTGACACAGCTTGAAGGCCATCAGAAGGTTGTTAGTGCAATTGCATTTCCCTCTGGCTCGGATAAGCTTTATACTGGAAGTACTGATGAGTCTGTAAGGGTTTGGGACTGCCAGTCCGGACAGTGTGTAGGTGTTATCAATCTTGGTGGTGAAGTGGGTTGCATGCTCAGTGAAGGTCCTTGGATATTTGTAGGATTACCTAATTTTGTGAAGGTCTGGAACATACAAAATCAATTGGAAATGAGTTTAAATGGTCCCGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGATATGGAAGTTCAATATAGTTGCTAACTGCTTTGAGCCAGCTGCATCACTTAAGGGTCACACGCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTGTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAACCTTGAAAATTTGCAGTGTCTACAGACACTAACAGACCACACGTCTGTTGTGATGTCTCTTCTCTGTTGGGAGCAGTTCCTTTTGTCTTGTTCGTTGGATAAAACAGTGAAGGTGTGGTATGCTACAGAAAGTGGAAACTTGGAAGTGACATATACTCATAATGAAGAGCATGGAATACTTACTCTCTGCGGAATGCACGATGCACATGGCAAGCCCATTTTGTTGTGCTCTTTAAATGATAATACTGTGCGCCTCTATGACCTGCCATCATTTGCAGAGAGAGGCAAGATATTCACAAAACAAGAGGTACGGGCAATTGAGGCAGGGCCTAATGGCTTATTCTTCACTGGTGATGGAACTGGTCAAGTCAAAGTGTGGAATTGGACACCGGAGCCAGTACCTACCATCCAATAA 1311 0.4554 MDLDGGNKRVYQRLGGPSGDSKHQKVCYHWQAGKCNRHPCPFLHSELPTPNVNGTSSKRPHGSADNSGFSGHRRTPHFNNTWGRGGGRGVGGRGAGGGVVGGDMSVVRKADKVCNYWIQGNCNFGERCKFLHSWNTGDGFSMLTQLEGHQKVVSAIAFPSGSDKLYTGSTDESVRVWDCQSGQCVGVINLGGEVGCMLSEGPWIFVGLPNFVKVWNIQNQLEMSLNGPVGQVYALVVNNDMLFAGTQDGSILIWKFNIVANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLENLQCLQTLTDHTSVVMSLLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGILTLCGMHDAHGKPILLCSLNDNTVRLYDLPSFAERGKIFTKQEVRAIEAGPNGLFFTGDGTGQVKVWNWTPEPVPTIQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00010 436 SUPERFAMILY WD40 repeat-like 127 427 IPR036322 GO:0005515
Stsc272079g00010 436 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Stsc272079g00010 436 ProSiteProfiles Zinc finger C3H1-type profile. 108 135 IPR000571 GO:0046872
Stsc272079g00010 436 MobiDBLite consensus disorder prediction 51 90 - -
Stsc272079g00010 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515
Stsc272079g00010 436 Pfam Zinc finger domain 114 132 - -
Stsc272079g00010 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Stsc272079g00010 436 FunFam Zinc finger CCCH domain-containing protein 48 226 434 - -
Stsc272079g00010 436 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272079g00010 436 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Stsc272079g00010 436 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Stsc272079g00010 436 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Stsc272079g00010 436 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Stsc272079g00010 436 SMART c3hfinal6 110 134 IPR000571 GO:0046872
Stsc272079g00010 436 FunFam Zinc finger CCCH domain-containing protein 48 134 224 - -
Stsc272079g00010 436 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Stsc272079g00010 436 Gene3D - 197 342 IPR015943 GO:0005515
Stsc272079g00010 436 Pfam WD domain, G-beta repeat 266 299 IPR001680 GO:0005515
Stsc272079g00010 436 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Stsc272079g00010 436 Pfam WD domain, G-beta repeat 143 178 IPR001680 GO:0005515
Stsc272079g00010 436 SUPERFAMILY CCCH zinc finger 109 133 IPR036855 GO:0046872
Stsc272079g00010 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
Stsc272079g00010 436 SMART WD40_4 262 299 IPR001680 GO:0005515
Stsc272079g00010 436 SMART WD40_4 139 178 IPR001680 GO:0005515
Stsc272079g00010 436 SMART WD40_4 343 386 IPR001680 GO:0005515
Stsc272079g00010 436 SMART WD40_4 389 426 IPR001680 GO:0005515
Stsc272079g00010 436 SMART WD40_4 302 339 IPR001680 GO:0005515
Stsc272079g00010 436 SMART WD40_4 218 255 IPR001680 GO:0005515
Stsc272079g00010 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Stsc272079g00010 436 MobiDBLite consensus disorder prediction 51 77 - -
Stsc272079g00010 436 Gene3D - 103 133 - -
Stsc272079g00010 436 Gene3D - 343 436 IPR015943 GO:0005515
Stsc272079g00010 436 Gene3D - 7 56 - -
Stsc272079g00010 436 Gene3D - 134 196 IPR015943 GO:0005515
Stsc272079g00010 436 PANTHER - 108 431 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00010 Stsc-Chr272079 49024 52700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00010 241 426 Miscellaneous Gene Families AT5G08390 26.768 4.55e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc272079g00010 WD40 0.0049 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00010 - - gmx:100775542 730.709