Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00009 ATGGCTATTGCCAAGAGTAACAACAATAGCAGCAATGAGCCTTCTACTTCATACAAGTGTTACAAAGTAGCAGGCTTGATCGAAACCATATTAGACACGAATCATACTGCTAATTTGAAAGATCGATATGTTCTCGGGGAGCAGTTAGGCTGGGGGCAATTTGGTGTCATCAGAGCTTGCTCTGATAAGCTGACAGGAGAGGTTTTGGCTTGCAAATCAATTGCTAAGGATAGGTTGGTTACTTCAGAGGATCTGCGAAGCGTCAAGCTTGAGATTGAGATCATGGCTAGGTTGTCTGGGCACCCGAATGTTGTCGATCTCAAAGCCGTTTATGAAGAAGAAGATTTTGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTCCACAGGTTAGAGAAGCACGGGCAGTTTTCTGAATCTGAAGCCAGGGTTATCTTTAGGCACTTAATGAAGGTGGTTTTGTATTGTCACGAGAATGGTGTTGTTCATAGAGATTTGAAGCCGGAGAATATTCTCCTTGCTACTAGATCATCATCATCTCCAATCAAATTGGCCGATTTTGGGCTCGCAACCTACATCAAACCTGGACAAAGTTTGCACGGGCTAGTTGGGAGTCCATTCTATATTGCTCCCGAGGTATTGGCAGGTTCGTATAACCAGGCTGCTGATGTGTGGAGTGCAGGGGTTATTCTTTACATTCTATTAAGCGGGATGCCTCCATTTTGGGGGAAGACCAAATCCCGGATATTCGATGCTGTTAAGGCTGCTGCCCTAAGGTTCCCTTCCGATCCTTGGGACCACATTTCTGAGTCAGCTAAGGATTTGATCAGGGGAATGCTCTGTACAGAACCTTCTCGAAGGCTTACCGCCCAGGAGGTTTTAGATCATTGCTGGATGGAAAGCAATCAAACAAATACTGAACAGCTAAGTGAACATAAAACCGGAAGTTGTGAAGAATGGGATGTTGGCGGCGGCTCATTCTCTGCTTCTTTTATGTCCAGGAGTCAGGATATCAGCTTTGGCGCCAGTTCGCCTACTTGCGATGCTCAATCACCTACATTCACATGCAGATCATCATTTTCGTCTTTTCTCGTGGAACCAGTTACTCCTTGTTTGGTTTCTGGTGGGTTTTCATTTCAGAGCACCAAAGATTCCAACGACGGCTTGGAATTTTCTTCTCCTGTTCAATCAATGCTCAGCTTTTCATTTATTAGTCCCGGTTCTGTTGAGCAAAAGAGTTGTAAATTGGTATGCTCAACTAACACAGCCGCAATAGATTCACTCACTGGAGAATCAAGCCTGGAAAAGTTGCTTCTGGTACCAGATTCTCCGGCTTGCATCATCGGAGTTGATGTTAAAGAATCGAGCCGGAAGACTGTGGAGAATAAAAGGGCAGGTGGAGTGAATGGACAAAGGGTATTGGGAATCCACAACAAGAGAAACCGAACAATCGGACTCGGCGATTGCGAGCAACTAGATCTTGTGGTGACCGAGTCGATCATCCGCTGGTCGTCGTGCACACAACTCCCTACATCTTTGAGATCATCACTTGTCTGCTGA 1566 0.4559 MAIAKSNNNSSNEPSTSYKCYKVAGLIETILDTNHTANLKDRYVLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSEDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKHGQFSESEARVIFRHLMKVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFDAVKAAALRFPSDPWDHISESAKDLIRGMLCTEPSRRLTAQEVLDHCWMESNQTNTEQLSEHKTGSCEEWDVGGGSFSASFMSRSQDISFGASSPTCDAQSPTFTCRSSFSSFLVEPVTPCLVSGGFSFQSTKDSNDGLEFSSPVQSMLSFSFISPGSVEQKSCKLVCSTNTAAIDSLTGESSLEKLLLVPDSPACIIGVDVKESSRKTVENKRAGGVNGQRVLGIHNKRNRTIGLGDCEQLDLVVTESIIRWSSCTQLPTSLRSSLVC 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00009 521 CDD STKc_CAMK 42 300 - -
Stsc272079g00009 521 Gene3D Phosphorylase Kinase; domain 1 44 129 - -
Stsc272079g00009 521 Pfam Protein kinase domain 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272079g00009 521 SMART serkin_6 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272079g00009 521 SUPERFAMILY Protein kinase-like (PK-like) 40 369 IPR011009 -
Stsc272079g00009 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 309 - -
Stsc272079g00009 521 ProSitePatterns Protein kinases ATP-binding region signature. 49 76 IPR017441 GO:0005524
Stsc272079g00009 521 FunFam Calcium-dependent protein kinase 1 45 128 - -
Stsc272079g00009 521 ProSiteProfiles Protein kinase domain profile. 43 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272079g00009 521 Gene3D Transferase(Phosphotransferase) domain 1 130 323 - -
Stsc272079g00009 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Stsc272079g00009 521 FunFam Phosphoenolpyruvate carboxylase kinase 130 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00009 Stsc-Chr272079 42740 46455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00009 30 306 EF-hand Containing Proteins AT3G57530 49.819 3.67e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc272079g00009 Pkinase 3.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00009 - - gmx:100776088 872.848