Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00007 ATGGCACTCTTTCTCTGTCACAATCCTCTTCCTTATCCATATTCTCATTCTTCTTTCAAACCCAAGCACGCTTTCACTCTCTCTCCCTCTTCTCTCTCTCCCATTCTCTCCTTCTCTCCTCCTTCAAACGCCAAGTTCACCACTTTCACACCAAATGCCTACGTCACAGGACCCGCCTCCGATCCAATCTTCGATGAACAGGCTCCCAAGCTTGATGGGTCGGGTCACGACAAACCCAATCCCCCACCCAAGGTTATAAGCTGGGGCTTGCTATGGATGCTTCTGACCAAGCACAAGCTGAGGCTCATTCTTTCCCTTGCAACTCTCATTGCTTGCTCCACTTGCACTCTTTCCATGCCCATTTTCTCTGGGCGTTTTTTTGAAGTCCTTATTGGTGCTAGACCAGAGCCATTGTGGAGGTTGCTCAGTCAAATTGGAGTGTTGTATGCAATGGAACCACTTTTAACCGTGATTTTTGTTGTAAACATGAACACAGTGTGGGAGAAAGTTATGTCAACTCTTAGAGCTCAGATCTTTGGCAGAATATTGATTCAAAAGGTTGAATTTTTCGACAAATACAAGGTTGGTGAACTCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGATATTGTGAGTGAGAATGTCTCAAGGGATCGCGGTTTCAGGGCATTATCTGAGGTCGTTGGGACGATATTCATTCTTTTCTCTTTATCCCCTCAGCTAGCCCCACTTCTTGGTATTCTCATGCTTACAGTTTCTCTCTCGGTCGCTGTCTACAAGAGATCGACATTCCCTGTTTTTAAAGCGCATGGGTTGGCCCAAGCATCAATAGCTGATTGTGTATCAGAAACATTCTCTGCTATTCGAACAGTAAGATCTTTTGGTGGTGAAAAGCGCCAAATGTTTACATTTGCTAAACAGGTTCTTTCTTTCCAATCAAGTGGGATAAAGCTTGGTACTTTCAAATCATTTAATGAATCCATGACCAGGGGTGAGCTCTCAGTCGGAGCTATGGCATCTTTCATTGGATATACTTTCACTTTAACATTTGCTGTTCAAGGACTGGTTAATACATTTGGGGATCTTCGAGGAGCTCTTGCGGCCGTTGACAGGATCAACTCTGTTTTATCTGGAGTTCAAGTTGATGATTCTCTTGCCTATGGCTTAGAAAGAGAACTAAGACAACAGAAAGCAGTGGATGATGACAGATATAAATTATTCTTCTCTAATAGTTCAACTGAGAAAAACCAAATGCATTACATGTCAGCACTAAAAACATCTAGCAATTTGTCAAACTTGGCTTGGTCTGGAGATGTTTGTCTCGAAGATGTCTATTTCTCTTATCCTTTAAGGCCAGATGTGGAAATCTTGCGCGGTTTAAATCTAAAACTAAAATGTGGAACTGTAACTGCACTGGTGGGTTCTAGTGGCGCAGGCAAAAGTACCATAGTGCAGCTATTGGCTCGATTCTATGAGCCATTAAGAGGTTGCATAACAGTTGCGGGAGAGGATGTAAGAACATTTGACAAGAGCGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTCTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGTCTTCCGGATGAGAATGTTTCCAAAGAGGATATCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTCATCATTTCGCTTCCACAGGGCTATGATACGCTTGTCGGTGAGCGTGGAGGCCTACTGAGTGGAGGACAGAGGCAGAGAATTGCCATAGCCCGAGCTATCCTAAAGAATGCTCCAATCCTTATACTGGACGAGGCCACGAGTGCGCTGGATGCTGTCAGCGAGCGGCTGGTACAAGATGCTCTGAACCATTTGATGAAAGGGAGGACGACACTAGTAATAGCTCATCGATTGAGCACAGTTCAAAATGCTCATCAAATTGCACTTTGTTCCGAAGGGAGGATCGCGGAACTAGGCACACATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTTGTTAGCACTCAGAGGCTTGCATTTGAATGA 2058 0.4397 MALFLCHNPLPYPYSHSSFKPKHAFTLSPSSLSPILSFSPPSNAKFTTFTPNAYVTGPASDPIFDEQAPKLDGSGHDKPNPPPKVISWGLLWMLLTKHKLRLILSLATLIACSTCTLSMPIFSGRFFEVLIGARPEPLWRLLSQIGVLYAMEPLLTVIFVVNMNTVWEKVMSTLRAQIFGRILIQKVEFFDKYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEVVGTIFILFSLSPQLAPLLGILMLTVSLSVAVYKRSTFPVFKAHGLAQASIADCVSETFSAIRTVRSFGGEKRQMFTFAKQVLSFQSSGIKLGTFKSFNESMTRGELSVGAMASFIGYTFTLTFAVQGLVNTFGDLRGALAAVDRINSVLSGVQVDDSLAYGLERELRQQKAVDDDRYKLFFSNSSTEKNQMHYMSALKTSSNLSNLAWSGDVCLEDVYFSYPLRPDVEILRGLNLKLKCGTVTALVGSSGAGKSTIVQLLARFYEPLRGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKEDIIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARAILKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSEGRIAELGTHFELLAKKGQYASLVSTQRLAFE 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00007 685 Pfam ABC transporter transmembrane region 102 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272079g00007 685 Gene3D - 439 682 IPR027417 -
Stsc272079g00007 685 Pfam ABC transporter 459 610 IPR003439 GO:0005524
Stsc272079g00007 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 441 679 IPR003439 GO:0005524
Stsc272079g00007 685 SMART AAA_5 468 662 IPR003593 GO:0016887
Stsc272079g00007 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 680 IPR027417 -
Stsc272079g00007 685 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 73 683 IPR039421 -
Stsc272079g00007 685 CDD ABC_6TM_TAP_ABCB8_10_like 106 374 - -
Stsc272079g00007 685 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 103 366 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272079g00007 685 SUPERFAMILY ABC transporter transmembrane region 91 374 IPR036640 GO:0005524|GO:0016020
Stsc272079g00007 685 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 439 683 - -
Stsc272079g00007 685 ProSitePatterns ABC transporters family signature. 582 596 IPR017871 GO:0005524|GO:0016887
Stsc272079g00007 685 Gene3D ABC transporter type 1, transmembrane domain 153 438 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00007 Stsc-Chr272079 34784 39581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00007 118 685 Calmodulin-binding Proteins AT2G36910 33.554 1.37e-76 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00007 K05657 - gmx:100791034 1043.11