Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00003 ATGTTTACCTTCACTACTACTCACTCGAACTCCAACACATGGCCTCCTATTTCTTCTGAATTCTCCTCTTCCTATGACACTTCTTCCCCACTTTCCGACGCAAGTACCAGTGGACCTGTTCATGCTCTCGTGCTTTCTAATTCTGACGACGAGGTCATGCTGGCGGCGACTCACCCCAAGAAGCGTGCGGGCAGGAAGAAGTTCAAGGAGACACGTCACCCTGTGTACCGGGGTGTCAGGAGGAGGAACTCTGATAAGTGGGTTTGTGAAGTCAGGGAGCCAAATAAGAAGTCTAGGATTTGGCTTGGGACGTTCCCCACCCCTGAGATGGCCGCGCGTGCTCATGACGTGGCAGCTATAGCCTTGAGAGGCCGCCACGCTTGCCTCAACTTTGCTGATTCTGCGTGGCGACTTCAGGTTCCTGCCACGTCAGATGCCAAGGCCATCCAAAAGGCCGCGGCAGAGGCTGCTGAGGCCTTCCGGCCTGAGATGGCCTTGGAGACTAATGACACTACCAAAGAGTGCATCGATGATGAGGTGGCAGCAACGGCGGTGCTGAAGGAGGAGGAGCAAGGAGTGTTCTTTACGGAGGAGGAGGAAGGGGGATTGCCGGAGTCATTGAGAAACATGGTTCTCATGTCCCCAACACATTGCATGGGCTATGAGTGCGGATATGCTGACGTGGACGTTGGTGATGCTGAGGTGTCATTATGGAGTTTTTCAATTTAG 729 0.5364 MFTFTTTHSNSNTWPPISSEFSSSYDTSSPLSDASTSGPVHALVLSNSDDEVMLAATHPKKRAGRKKFKETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAIALRGRHACLNFADSAWRLQVPATSDAKAIQKAAAEAAEAFRPEMALETNDTTKECIDDEVAATAVLKEEEQGVFFTEEEEGGLPESLRNMVLMSPTHCMGYECGYADVDVGDAEVSLWSFSI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00003 242 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Stsc272079g00003 242 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Stsc272079g00003 242 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Stsc272079g00003 242 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Stsc272079g00003 242 Gene3D AP2/ERF domain 75 133 IPR036955 GO:0003700|GO:0006355
Stsc272079g00003 242 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 28 239 IPR045277 GO:0003700
Stsc272079g00003 242 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Stsc272079g00003 242 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Stsc272079g00003 242 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Stsc272079g00003 242 FunFam Ethylene-responsive transcription factor 2 74 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00003 Stsc-Chr272079 18204 19290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00003 16 240 AP2-EREBP Transcription Factor Family AT5G51990 52.966 1.03e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272079g00003 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00003 - - gmx:547622 289.271