Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00002 ATGCTTAAGAAGGCTTCATCACTTCATAAGCTGAAACCCATCAAACGGAATAATCATAGGATGCCTCCGAGTAATGAGAAGCCAGTGCCACACCTAGAGTCAGAACCAATCTTGGTTCCGGCCCCAGCTTTGGCCCCAACTCCAGTCCCGGAGCCGATTCCAATGCCTGATCCAGCTCTGGCCCCGGCTCCAGCTGTGACAGCCGCACCGGCACTGGAATTGGCTCCATTAGATAGTGAAGGAGAAGGAGAGATACCAACACCATCATCACCACCTTCTTCTATAAAATCATCATCAACAAATTCTGGGGGTAGTAAGAGCAGAAAGAGAAAGAGTAGTGAAATGAACAACTCGTCGGAAGGAGAATCATCGGGTCCTAAACATAAGAAAAAAGTTACTTGGACAAATGGCCTTCATAACCGATTCCTCGTTGCCATAAGGCACATTGGATTGGATAAGGCCGTGCCAAAGAAAATTCTTGAGATCATGAATGTGCCAAACTTGACAAGGGAAAATATTGCTAGTCACTTGCAGAAATATCGGATATTTCTGAGGAAGGTTACAGAGAAAGGAATACTTGGAGGATTATCAGAAAGAACCCTAAGGTCAAAGTTTGCTGCAGAGCTTCCAATTGATATGATAAAAGAGATGCAAGAAAGTGTTGAGAAGCTTAATAATACCAAAATTTTCATACCCACCACTACTCCATTAATGCAAGCTCTACTTGGTCGCAGTTACCCTCTTTTTTACACCCCTAATAATAACAACAATAATGGAGTTGCACCCACATACCCTAACAACACTCAAATGTATCCCCAGAACTATGCTCAACCACCACCACCAATGGGGATCAATAATAATAATAATAATCTTCAGAATCAGAGCTGCTATGGTGGTCCAATGATGTATAATAATCAGATTCAGAACTATGCTCAACTACCACTAATGGGGAACAATAGTAATTATCAGCATCAAAGCTATGATCTTGGAATGGGAAACATGGTTTCTATGGGAAACCCTAATAATATAAATAACAATAATATGCCCTTCATGAATGATGCTCCTCCTTCTTACTACCCTAATTATACTTTTGGTGGAGAGATTCTTGGTGTCCATGGCCATGGAGGGCTCAATAATAATGGTGTTGGTGTTGGTGGTGGTGGTGGTGGTGCAACTACTCCTATTCCTATTTCCAACAACAACTATAATAATAGTAATGTTAATGGATTTGGATTCATGGGTGGAGCTAATATTCAAAACTCAAATAATAATATCAATGGAAACTATCCTCCTGCTATGGTTCAAGGATATTATGCTCCGCCGCAGCCTCCTACTCCTCCTGCTGGTGGTGGTGGATTCTATGCTGCTCCTCCTCCGCCTCCTGCTGCCGCCGTTATTAATAATAACGGAATTGATATAATGAGGAAGCATGCAGGTGCACAAAACAATTCAGGAGGAAGCTTTAGCAGCCAGAGCAGTGTCACTACTGTCTCTGCAGGAAACAGTGCAGATCAGCCTATTCAAGTGGATGATAACGTTCTTTCCAATCTCTTCTTCATGCTGGAAGACATGCGTCTTCTTCAACAGTCTGAGCAGGCAGCTAAGAACCAAGAAATCAACAATGCATTTTTTATGCCCGCTAACTTTATGCCTGCTAACTCCTCCACTTGTTCTAATGTTATGCAATCTCCTTATCAACAGCAGCAGGTTGGAGGGAACCAAGTCCCTGATGACTTTTTTGACTTTTGTGGCTCTGCTAATGTTATGCAACAGACTCGGATATCCGGAGATGTGATTGTTCCATCTGCTGAAAACATCATGAATCTGCAAACTCAGCTACCAATAACAACCAATGACTATACTCCAATTCAGGCAAGTATATATACTGCCAAATTTTACTGA 1902 0.4211 MLKKASSLHKLKPIKRNNHRMPPSNEKPVPHLESEPILVPAPALAPTPVPEPIPMPDPALAPAPAVTAAPALELAPLDSEGEGEIPTPSSPPSSIKSSSTNSGGSKSRKRKSSEMNNSSEGESSGPKHKKKVTWTNGLHNRFLVAIRHIGLDKAVPKKILEIMNVPNLTRENIASHLQKYRIFLRKVTEKGILGGLSERTLRSKFAAELPIDMIKEMQESVEKLNNTKIFIPTTTPLMQALLGRSYPLFYTPNNNNNNGVAPTYPNNTQMYPQNYAQPPPPMGINNNNNNLQNQSCYGGPMMYNNQIQNYAQLPLMGNNSNYQHQSYDLGMGNMVSMGNPNNINNNNMPFMNDAPPSYYPNYTFGGEILGVHGHGGLNNNGVGVGGGGGGATTPIPISNNNYNNSNVNGFGFMGGANIQNSNNNINGNYPPAMVQGYYAPPQPPTPPAGGGGFYAAPPPPPAAAVINNNGIDIMRKHAGAQNNSGGSFSSQSSVTTVSAGNSADQPIQVDDNVLSNLFFMLEDMRLLQQSEQAAKNQEINNAFFMPANFMPANSSTCSNVMQSPYQQQQVGGNQVPDDFFDFCGSANVMQQTRISGDVIVPSAENIMNLQTQLPITTNDYTPIQASIYTAKFY 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00002 633 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 185 IPR017930 -
Stsc272079g00002 633 PANTHER TRANSCRIPTION ACTIVATOR GLK1 96 392 IPR044825 GO:0003700|GO:0045893
Stsc272079g00002 633 MobiDBLite consensus disorder prediction 1 133 - -
Stsc272079g00002 633 Gene3D - 126 188 - -
Stsc272079g00002 633 MobiDBLite consensus disorder prediction 1 17 - -
Stsc272079g00002 633 SUPERFAMILY Homeodomain-like 128 186 IPR009057 -
Stsc272079g00002 633 FunFam Two-component response regulator 126 188 - -
Stsc272079g00002 633 MobiDBLite consensus disorder prediction 86 106 - -
Stsc272079g00002 633 MobiDBLite consensus disorder prediction 41 63 - -
Stsc272079g00002 633 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 182 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00002 Stsc-Chr272079 5406 9482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00002 97 205 Response Regulator Gene Family AT5G07210 60.000 5.33e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc272079g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00002 - K14491 aip:110272169 230.335