Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272079g00001 ATGGCTGATCAAGTTCAACCTCCACCGCCACCTCCACCGCCACCTCAGCCACCACAACGTAAAGCTTGCTGGGCATGCGCCAAACACAGAAAACGCTGCCAACCTGATTGCATATTTGCTCGCTATTTCCTCCATGACCCTGATACCTTGGCTAACATTTATAAGCTTTTCGGTCTTGAAAATGCAAGAAAACTTCTCATGAAAGTTAGGCCTGAGGAGCAAGAAGAAACAGCAAGAACTTTGGGTGTTGAAGCTAATATGTGGAAACAATACCCTGTTACTGGTCCTGTAGGGATGATCAATGATTATGCAAACTTAATCCAGCAAAATGAGATTGAACTTGCCACTATACACGCTTTCATTCAGCAATGCAAGATGGCACAATGTTCATCTTCATCTGCTGAACAAAATGATGAAAATGCAGAGAATCAAACATTATCATCATCTGTTGATGCCATGCCCATTCCCCCTAATGATGGCAAGCCTTATTAG 492 0.4329 MADQVQPPPPPPPPPQPPQRKACWACAKHRKRCQPDCIFARYFLHDPDTLANIYKLFGLENARKLLMKVRPEEQEETARTLGVEANMWKQYPVTGPVGMINDYANLIQQNEIELATIHAFIQQCKMAQCSSSSAEQNDENAENQTLSSSVDAMPIPPNDGKPY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272079g00001 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 140 - -
Stsc272079g00001 163 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272079g00001 163 ProSiteProfiles LOB domain profile. 21 121 IPR004883 -
Stsc272079g00001 163 MobiDBLite consensus disorder prediction 133 152 - -
Stsc272079g00001 163 MobiDBLite consensus disorder prediction 133 163 - -
Stsc272079g00001 163 SUPERFAMILY Formin homology 2 domain (FH2 domain) 7 17 - -
Stsc272079g00001 163 Pfam Lateral organ boundaries (LOB) domain 22 117 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272079g00001 Stsc-Chr272079 3699 4389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272079g00001 23 115 AS2 family AT1G65620 40.426 1.77e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc272079g00001 LOB 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272079g00001 - - dct:110111846 77.4109