Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272078g00011 ATGACGCCATTGCCGGTGGTGGAGCAGACGGGGGAATCAGCGGCGACGGAGTCTCAGAGATCTATCCCGACGCCGTTTCTGACGAAGACGTACCAGCTGGTGGATGATCCCTCTGCTGATGACCTAATCTCATGGAACGAAGATGGCACCACCTTTATTGTTTGGCGACCAGCTGAATTCGCTCGAGATTTGCTCCCAAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTTCGCAAGGTCGTACCTGACCGCTGGGAATTCGCTAATGAATGTTTCCGGCGAGGGGAGAAAGGTTTGCTTCGCGACATACAGAGGCGGAAAATCTCGCCGGCGCCACCAGCTGCCGTCGCAGACGGTAATGCGGTGACGGTTGCCATGGCGGCACCGGTGAGAGTGGTGTCGCCTACGCCGACGAATTCCGGCGATGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTCCTCCTCCTGCTGCTGTGCTACACAACGGTAATAATAAAAATACGGTGCACCGCACAACGAGTTGCACCAGTGGACCTGAGCTATTAGAAGAGAACGAAAGGCTTAGGAAAGAGAACACTCAAATGAAAAACGAGTTGAGTCAATTGAGAGGTCTGTGTAATAAGATACTGGCGTTGATGAACAATTATGCTTCTCGTTCTTCAGCGCAATTGCTAGATTCCTCTGCTAGTGGCGTCGCCGCCGCGGTAGCTGAAGGGAAAGCGTTGGACCTTTTGCCTGACAAGCGAATTCTATGTACTGCTGAGGCCGCAGCCGAAGCGGAGGTTCCCAAGCTGTTTGGGGTTTCCATTGGGATGAAACGCTCTAGAATTGAAAGCGAGGCTGAAACGGAGAGAGAAGATCACAATCAAACGCAAGCACAGTCATCACAAGAACCTGACCGCGGGTCAGATGTAAAATCTGAGCCGTTGGATGGGGACGGATCGGATGATCAGGACCCTCGATGGCTTGAGCTCGGGTAA 1011 0.5242 MTPLPVVEQTGESAATESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANECFRRGEKGLLRDIQRRKISPAPPAAVADGNAVTVAMAAPVRVVSPTPTNSGDEQVLSSNSSPIAPPPAAVLHNGNNKNTVHRTTSCTSGPELLEENERLRKENTQMKNELSQLRGLCNKILALMNNYASRSSAQLLDSSASGVAAAVAEGKALDLLPDKRILCTAEAAAEAEVPKLFGVSIGMKRSRIESEAETEREDHNQTQAQSSQEPDRGSDVKSEPLDGDGSDDQDPRWLELG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272078g00011 336 FunFam Heat stress transcription factor B-4 18 116 - -
Stsc272078g00011 336 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272078g00011 336 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272078g00011 336 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272078g00011 336 MobiDBLite consensus disorder prediction 1 21 - -
Stsc272078g00011 336 Coils Coil 284 304 - -
Stsc272078g00011 336 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272078g00011 336 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272078g00011 336 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc272078g00011 336 MobiDBLite consensus disorder prediction 311 336 - -
Stsc272078g00011 336 MobiDBLite consensus disorder prediction 286 301 - -
Stsc272078g00011 336 Coils Coil 188 215 - -
Stsc272078g00011 336 MobiDBLite consensus disorder prediction 286 336 - -
Stsc272078g00011 336 Gene3D - 18 116 IPR036388 -
Stsc272078g00011 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 304 IPR027725 -
Stsc272078g00011 336 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272078g00011 Stsc-Chr272078 41873 44117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272078g00011 17 336 HSF AT4G11660 54.277 1.82e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc272078g00011 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272078g00011 K09419 - gmx:100791020 456.447