Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272078g00010 ATGTATGATGTGATGTTGGAGGTTGAGAAGGAGCTGGAGGAGTTCAGTTTTGAAATTGATTCAGCTGAAGGAGATGGAGTTCACTTATGCCTTTCTTCCCCCAAATGCAACTGTGATGCCACTCTTCTGAAATCGACTCCTGTTTCAGGGAGTAGCAAGGCTGAAGCTAGACGCTGGACAGAGGAAGAGGACAACCTTTTGATTCAGATAGTCAAGAAGCACGAAGCAAGGAACTGGAAGAAAATAGCTGCGAACCTTCCAGGGCGAACTGAAGTTCAATGCTTACATCGCTGGCAGAAAGTTTTGGATCCTGATCTTGTAAAGGGTTATTGGACAAAGGAGGAGGATGATCGCCTCACTGAGCTAGTAAGAAAGCATGGTTTGAAGAGGTGGGCTGGAATTGCAAAATTATTACCTGGTCGTATTGGGAAGCAATGCCGAGAGAGGTGGCACAATAATCTTGATCCAGCTGTAAGGAAAGACGCATGGACGGAGGAGGAGGAATTGGCACTTGCTCACTATCACCAGATTTATGGCAGTAAGTGGGCAACGATCTCAAGGACTGACAACGCTATTAAAAATCATTGGAATCGTTCAATGAAAAAGAAATGGGATGCATCTTCACATCTTGGTTTTGACCTAAACGTTGCTCCTTCCAGTTTTTGCACATCTCCAACAGAGCCAGCTCATATTTCAGTTGAAGTAGAGAACCATAGTTTCCATGAAATGGATTCTCTAAATCATAGTCAGGTGTTGAAGGACAGGATTGATAACTTCCCAACAACACACTTGGTTCTTCAAAAGCCCTGCAAAACTCCCAAACGGCAGAAAGTGTCTTCCTCAGATACCAAGAGAGGCCAAGTTGGAAATGGAAGCAACAAGAAAATCAACAGTATGTGGCATAATGCAGATGGCATGAGTAACGACATAGGATGTGGGAACAATAATGACAGCAGAGATACTCCCACAATGTCTGAACGAAATCCAGAATCTGTACTAAGAAGCTTAGCGATGTCCTATGAGAATATTCCTTCAATTATTAGGAAACGAACTCCCACCAATGCTGGCTGTTCCCAAACTCTGAAGCTGAACGTGTTATAA 1101 0.436 MYDVMLEVEKELEEFSFEIDSAEGDGVHLCLSSPKCNCDATLLKSTPVSGSSKAEARRWTEEEDNLLIQIVKKHEARNWKKIAANLPGRTEVQCLHRWQKVLDPDLVKGYWTKEEDDRLTELVRKHGLKRWAGIAKLLPGRIGKQCRERWHNNLDPAVRKDAWTEEEELALAHYHQIYGSKWATISRTDNAIKNHWNRSMKKKWDASSHLGFDLNVAPSSFCTSPTEPAHISVEVENHSFHEMDSLNHSQVLKDRIDNFPTTHLVLQKPCKTPKRQKVSSSDTKRGQVGNGSNKKINSMWHNADGMSNDIGCGNNNDSRDTPTMSERNPESVLRSLAMSYENIPSIIRKRTPTNAGCSQTLKLNVL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272078g00010 366 Pfam Myb-like DNA-binding domain 58 102 IPR001005 -
Stsc272078g00010 366 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Stsc272078g00010 366 Pfam Myb-like DNA-binding domain 160 197 IPR001005 -
Stsc272078g00010 366 CDD SANT 162 198 IPR001005 -
Stsc272078g00010 366 Coils Coil 5 25 - -
Stsc272078g00010 366 MobiDBLite consensus disorder prediction 269 297 - -
Stsc272078g00010 366 SUPERFAMILY Homeodomain-like 57 112 IPR009057 -
Stsc272078g00010 366 CDD SANT 58 102 IPR001005 -
Stsc272078g00010 366 PANTHER MYB PROTEIN-RELATED 58 141 - -
Stsc272078g00010 366 FunFam Transcriptional activator Myb isoform A 55 107 - -
Stsc272078g00010 366 ProSiteProfiles Myb-like domain profile. 155 200 IPR001005 -
Stsc272078g00010 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 158 IPR017930 -
Stsc272078g00010 366 SUPERFAMILY Homeodomain-like 105 196 IPR009057 -
Stsc272078g00010 366 CDD SANT 111 154 IPR001005 -
Stsc272078g00010 366 ProSiteProfiles Myb-like domain profile. 51 102 IPR001005 -
Stsc272078g00010 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 204 IPR017930 -
Stsc272078g00010 366 Gene3D - 108 159 - -
Stsc272078g00010 366 Gene3D - 161 211 - -
Stsc272078g00010 366 MobiDBLite consensus disorder prediction 282 297 - -
Stsc272078g00010 366 FunFam Transcriptional activator Myb isoform A 108 160 - -
Stsc272078g00010 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 102 IPR017930 -
Stsc272078g00010 366 SMART sant 107 156 IPR001005 -
Stsc272078g00010 366 SMART sant 159 202 IPR001005 -
Stsc272078g00010 366 SMART sant 55 104 IPR001005 -
Stsc272078g00010 366 Gene3D - 55 107 - -
Stsc272078g00010 366 ProSiteProfiles Myb-like domain profile. 103 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272078g00010 Stsc-Chr272078 38159 40643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272078g00010 48 203 MYB Transcription Factor Family AT5G02320 62.112 2.62e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc272078g00010 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272078g00010 - K09420 adu:107488127 578.556