Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272073g00004 ATGATACCGCAAATATTACCTATCCCTGCAGCAATTCTCCTTGTGATATTCACAATTATCATTTTTCTATCACCACATTTGTTGAATTTAGCAACAAAACTTCAACATAACAAATGGGGTAGTAAAAAGCTCCCACCACCAGGTCCAAAGCCTTTACCGATTATTGGCAACCTTCATATGTTATTTGGAAAACACCCAAACCGAAGCCTTGAGACCCTTGCCACTAAATATGGACCTATAATGTCTCTAAAGTTAGGACAAATTCCTGCCGTTGTGGTTTCTTCTCCAGAAATCGCTCAGCTCTTTTTGAAAACTCATGACATAGTTTTCGCAAACCGGCCTAAGGTTCAGTTAGCAGAGATAATTCCTTATGCCCGGAAGGGGTTGATATTTATAGAGTACGGAGGTTATTGGCGCAATGTGAGGAAGTTGTGCGCCATGCAATTTCTGAGTCCATCAAAGGTTGAGATGTTTGGTCCTTTGAGGAAGAAGGAGTTGGGAATGCTGGTGAATAAACTTAACAAGGCTTCGGATTCACGTGACGTTGTGAATCTCAGTGAATTGATTGAGGAGATTGTTGCGAATATTGCTCATACCATGATATTGGGTCGTAGCAAGCACCACAAGTTTGACATCAAGGGCGTTATTTCTGAGGCTATGGACTCGGCTGGTGCTTTCAATCTTGCAGATTATGTGCCTATCCTAGGTTCATTTGATCTTCAGGGACTAAAGAGAAGAACAAGGAAAGCATTCAAGAATGCTGATGAAGTAATGGAGCAGATCATCAACGATCATGAACAACCATCATCAGCTAAATCCCCAAAGCATAACAAGGATCTCATAGACATATTACTCAGCCACATGAATGAATCAATGAACTCACATGATCATGAACAAAGACTTCTTGGGAGAACCAACGTAAAGGCCATTGCAATGGATATGGTTGCGGCAGCACACGACACTTCCAAATCCACAATCGAATGGGGCATGTCAGAGCTTTTAAAGAATCCATCAACAATGAAGAAACTTCAGAACGAGATTGAAGACCTTGTGGGAATAAACAGACAAGTGGAAGAAAAAGACTTAGATAAATTGCCATATCTTGACATGGTTGTGAAGGAGACATTACGGTTACACCCTCCAGTACCATTTCTTTTGCCACACGAGTCTTCAGAAGATGTTACCATAAATGGTTATTTCATAGAGAAAAACACACGGATCCTAGTGAATGTATGGGCAATAGGGAGGGATCCAAGAGTTTGGTCGGAAAATAGTAACATGTTTTTCCCAGAAAGATTTGAAGAGAATGATGTAGATGTTAAGGGGCATGATTTTAGGCTCATACCATTTGGGTCAGGTCGTAGAGGGTGCCCTGGAGTTAATATGGGTTTAACTACCACTAAGATTATTATAGCACAATTAATTCATTGTTTTAGTTGGGAGCTTCCATTGGGTATGTCTCCAAAGGAGTTAGATATGACTGAGGAATTTGGCCTCGTTATAACAAGAAGTAAGCACTTACTAGCTAGGCCAACCTATCGCTTACTTAGTGAAGCTTAA 1560 0.4071 MIPQILPIPAAILLVIFTIIIFLSPHLLNLATKLQHNKWGSKKLPPPGPKPLPIIGNLHMLFGKHPNRSLETLATKYGPIMSLKLGQIPAVVVSSPEIAQLFLKTHDIVFANRPKVQLAEIIPYARKGLIFIEYGGYWRNVRKLCAMQFLSPSKVEMFGPLRKKELGMLVNKLNKASDSRDVVNLSELIEEIVANIAHTMILGRSKHHKFDIKGVISEAMDSAGAFNLADYVPILGSFDLQGLKRRTRKAFKNADEVMEQIINDHEQPSSAKSPKHNKDLIDILLSHMNESMNSHDHEQRLLGRTNVKAIAMDMVAAAHDTSKSTIEWGMSELLKNPSTMKKLQNEIEDLVGINRQVEEKDLDKLPYLDMVVKETLRLHPPVPFLLPHESSEDVTINGYFIEKNTRILVNVWAIGRDPRVWSENSNMFFPERFEENDVDVKGHDFRLIPFGSGRRGCPGVNMGLTTTKIIIAQLIHCFSWELPLGMSPKELDMTEEFGLVITRSKHLLARPTYRLLSEA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272073g00004 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Stsc272073g00004 519 CDD CYP71-like 76 507 - -
Stsc272073g00004 519 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 SUPERFAMILY Cytochrome P450 46 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 Gene3D Cytochrome P450 37 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc272073g00004 519 PANTHER CYTOCHROME P450 93A3-LIKE 28 515 - -
Stsc272073g00004 519 FunFam Cytochrome P450 83B1 32 510 - -
Stsc272073g00004 519 Coils Coil 340 360 - -
Stsc272073g00004 519 Pfam Cytochrome P450 46 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272073g00004 Stsc-Chr272073 22237 26381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272073g00004 12 515 Cytochrome P450 AT5G07990 38.641 1.79e-119 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272073g00004 - - adu:107490427 746.117