Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272072g00008 ATGAGATTGGAAAAGTGCTGGTTTTGTTCTTCAACCGTGTACCCTGGGCATGGAATCCAGTTTGTTCGTAACGATGCAAAGATTTTTCGATTTTGTAGATCTAAATGCCACAAGAACTTCAAAATGAAGAGGAATCCTCGGAAGGTAAAATGGACCAAGGCATATAGACGGGTGCATGGAAAGGATATGACTCAGGATTCAACCTTTGAGTTTGAGAGAAAGAGAAACAGGCCAGAGAGATATGACAGGAATCTTGCAGAGACCGTCCTCAAGGCCATTCCAAAGATTGATAAGATCAGAGTCACCAGGGAGGAGAGGCACCACAAGAATAGGATGAAGGGCAAGAAGGAAAAGCTACAGAAGGAGGCAGCAAAGGAGTTGGAGCAGAGCATCAGTTTGGTCAAAGCTCCTTCGGCGCTTCAGAAGGACCCGTCTCTCACATTACCACAAAAGATCAAAGTCTCTGTTTCCCAACGGCAATCAGAAGACAACAATGCCATGGAGGAGTGA 510 0.4529 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAETVLKAIPKIDKIRVTREERHHKNRMKGKKEKLQKEAAKELEQSISLVKAPSALQKDPSLTLPQKIKVSVSQRQSEDNNAMEE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272072g00008 169 Coils Coil 109 129 - -
Stsc272072g00008 169 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Stsc272072g00008 169 SMART 4TRASH 6 44 IPR011017 -
Stsc272072g00008 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Stsc272072g00008 169 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Stsc272072g00008 169 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Stsc272072g00008 169 MobiDBLite consensus disorder prediction 143 162 - -
Stsc272072g00008 169 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Stsc272072g00008 169 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Stsc272072g00008 169 MobiDBLite consensus disorder prediction 102 169 - -
Stsc272072g00008 169 Pfam Ribosomal protein L24e 1 65 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272072g00008 Stsc-Chr272072 66167 68000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272072g00008 1 169 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 68.639 8.93e-83 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272072g00008 K02896 - gmx:100793564 309.301