LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272072g00003	ATGATGAGTATTCACCCACAAAAATTCTTAGTCTCAATAGGCTTGTACATTTTTCTCTTATTCTTGTTAATCTCCCTTCTTTCTATTATCCACACTTCAGCACTACATAACACAAACAAAGGCCACAGTAGGAAGAAAAGTGTTGCCAAATCATCTCCAATTATATCAGCAACATCTCCAATTTCTCCACCTCTAGTATTTGCAGATCAAAGGCTCCAATTAGTGTATCCAGTGATCCAAAAATTCAAGTCAAGCATAACCTTAGATCCCTTAGGAGTTACAAAAACATGGGTAGGTTCAGATATTTGTAGCTACAAAGGTTTCTATTGTGACACTCCACCTTACAACAGTTCAGCCGTTGCCTTAGCCTCAATTGATTTCAACGGTTTCCAACTCTCTGCTCCTACCCTTGATGGCTTCATAGATCAGTTACCTGATATTGCTCTGTTCCATGCAAATACCAACAATTTTGGTGGAACAATCACACCCCAGATTTCAAAGTTACCATATCTTTATGAGCTTGATCTTAGTAACAATCAATTATCAGGTCCATTTCCTGTGGCTGTTCTTGGAATGGAAACGTTAACGTTTTTGGATATTCGGTTCAATTTGTTCTCTGGGGCAGTTCCACCACAGATTTTCACAGAGAATCTTCAAGTTCTGTTCATCAACAACAACATATTCAATCAGAGTTTGCCTGATAACTTAGCTTCCACTCATATCTTGTTGCTAACTTTGGCAAACAACAAGTTCAATGGTCCAATTCCAAGAAATCTTCCAAAGGCTTTAGCCACACTTTCCGAAGTGTTGCTATTAAACAACCAGTTAACAGGCTGTTTGCCTTATGAGATTGGTTACCTTCAAGAGGCAACGGTTTTTGACGTTGGGAATAACCAGTTGACAGGACCGTTGCCATTCTCATTGAGTTGTCTTGAGAAGGCTGAGATTCTCAACTTTGCTGGGAATTTGTTGTATGGAATGGTGCCTGAAGTTGTGTGTGCAGGCTTGATGGGCAATTTGGTAAATTTCTCACTCTCTCATAACTATTTCAATGCTGTGGGACCCATTTGTAGGGTTTTGATTCAAAGGGGAGTTCTTGATGTTACAAACAATTGCATTCCTGATCTTCCATTGCAAAGATCAATTCTTGAATGTGCTGACTTCTTTGCACAACCAAGGATGTGTCCATTGATGTGGTATCATACTTTCATCCCTTGCAAGCTTCATTTTCATAACACCCCACTTTCTTCCGTTCCTTAG	1260	0.3952	MMSIHPQKFLVSIGLYIFLLFLLISLLSIIHTSALHNTNKGHSRKKSVAKSSPIISATSPISPPLVFADQRLQLVYPVIQKFKSSITLDPLGVTKTWVGSDICSYKGFYCDTPPYNSSAVALASIDFNGFQLSAPTLDGFIDQLPDIALFHANTNNFGGTITPQISKLPYLYELDLSNNQLSGPFPVAVLGMETLTFLDIRFNLFSGAVPPQIFTENLQVLFINNNIFNQSLPDNLASTHILLLTLANNKFNGPIPRNLPKALATLSEVLLLNNQLTGCLPYEIGYLQEATVFDVGNNQLTGPLPFSLSCLEKAEILNFAGNLLYGMVPEVVCAGLMGNLVNFSLSHNYFNAVGPICRVLIQRGVLDVTNNCIPDLPLQRSILECADFFAQPRMCPLMWYHTFIPCKLHFHNTPLSSVP	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272072g00003	419	Pfam	Leucine rich repeat N-terminal domain	80	111	IPR013210	-
	Stsc272072g00003	419	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	21	407	-	-
	Stsc272072g00003	419	Gene3D	Ribonuclease Inhibitor	244	385	IPR032675	-
	Stsc272072g00003	419	Gene3D	Ribonuclease Inhibitor	77	242	IPR032675	-
	Stsc272072g00003	419	SUPERFAMILY	L domain-like	82	373	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272072g00003	Stsc-Chr272072	21150	22501	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272072g00003	61	392	Leucine-rich Repeat extension Gene Families	AT3G24480	40.663	3.82e-82	259

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272072g00003	-		-	gmx:100808707	617.846