Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272072g00002 ATGGACTTTTCTACAACAAACTCTTCTACTTATTTGTCAACATTGACTAATAACAACATTGATGATCATAGCTTCCAAATGCAAAGGCCTCATCATCATCATAATGTGTCACTTAATATGCAAAAACCACCCTTATTGTCTAATTCATCTTCTTTGAATAAGAGGAACTTCAATTCATTGGATAATCATAATGTTCAATCCTCCTCTTCAAAGTGCCATTGCTCCAAAAAAAGGAAATTGAAGTTGAAGAGGGAGATTAGAGTGCCAGCTATTAGTTCAAAGACTGCTGATATTCCTTCAGATGATTTTTCTTGGAGAAAATATGGACAGAAACCTATTAAGGGCTCTCCTCATCCTAGAGGTTATTACAAATGTACGAGCGTGAGCGGATGCCCTGCACGCAAACACGTGGAACGTGCAGCAGACGATCCAAGCATGCTCATTATAACCTACGATGGAGAACATAATCACTCATTAACACCTTAA 486 0.3786 MDFSTTNSSTYLSTLTNNNIDDHSFQMQRPHHHHNVSLNMQKPPLLSNSSSLNKRNFNSLDNHNVQSSSSKCHCSKKRKLKLKREIRVPAISSKTADIPSDDFSWRKYGQKPIKGSPHPRGYYKCTSVSGCPARKHVERAADDPSMLIITYDGEHNHSLTP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272072g00002 161 SUPERFAMILY WRKY DNA-binding domain 95 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272072g00002 161 FunFam WRKY transcription factor 65 83 160 - -
Stsc272072g00002 161 Pfam Plant zinc cluster domain 64 97 IPR018872 -
Stsc272072g00002 161 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 44 159 IPR044810 GO:0003700
Stsc272072g00002 161 Pfam WRKY DNA -binding domain 101 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272072g00002 161 Gene3D WRKY domain 84 160 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc272072g00002 161 SMART WRKY_cls 99 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc272072g00002 161 ProSiteProfiles WRKY domain profile. 94 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272072g00002 Stsc-Chr272072 13465 15153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272072g00002 68 158 WRKY Transcription Factor Family AT5G28650 79.121 1.26e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc272072g00002 WRKY 9.1e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272072g00002 - - qsa:O6P43_016034 164.081