Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272069g00009 ATGGACACACAAACAGATATGATGGCAGAAATTGGAGAGCACAATAGCAACAACACCACATGTCATCCACCTCTCAATTCCATGGAAGAGACCTCCTTTTGCTGTGAACAATTGCCAGAGGGTGAATGCATTGAGATTCAAAAAGAAGAAGATGGTCCACTAGTTGAGTTAGATTGTCGAAATGGCTTTTCTGAAGGAAGAAAGCAGTTCGTCACACCTGCTGTCGGAATGGAGTTTGAGTCTTATGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTTGGATTTCGTGTAAGGGTGAAGAATTCATGGTTCAAGCGAAACAGCAGAGAAAAATATGGTGCGGTGCTTTGCTGTAGCAGCCAGGGATTCAAAAGAATAAAGGATGTTAACCACATGAGGAAAGAAACAAGAACTGGTTGTCCTGCAATGATTAGGATGAGGTTGATGGACTCGCAGAGGTGGAGGATACTCGAGGTCACACTTGAACATAACCACGTGTTAGGTGCTAAGATACATAAATCAGTTAAGAAAATGGGAACTGGAACCAAAAAGAAGTCATTGCCGAGCTCAAATTCTGAAGCGCACACAGTTAAGTTATACCGTGCGCTTGTGATAGATGCAGGAGGTAATTCTAATGCAATCTCAAATGCTAGAGAAGACAGAACTTCATCTGAATTTTCCAATCGGTTGAACCTTAAAAAGGGAGACACGCAAGCCATTTATAACTACCTGTGCCGTATGCAGTTGACTAATCCTAACTTCTTTTACTTGATGGATTTCAATGATGAAGGACATTTGAGGAATGTATTTTGGGCAGATGCTAGGTCCAGGGCTGCATGTGGTTATTTTGGTGATGTTATTTACTTTGACAACACTTATTTGTTGAGCAAATATGAAATCCCTCTTGTGGGTTTTGTTGGAATAAATCATCATGGGCAATCAGTGCTACTTGGTTGTGGTCTACTTGCAGGTGAATCGTTAGAATCGTATGTATGGTTGTTTAGAGCATGGATTAAATCTCTGTCTGGATTTTCTCCCCAAACTATTATTACTGATAAATGCAAGGTTTTGCAAAGTGCCATTGCAGAAGTTTTTCCCGGATCTCTCCACCGTTTTGGTTTGCCACTAATCATGAAAAAAGTACCAGAAAAGTTGGGAGGGTTGCGCAACTATGATATGATTAGGAAAGAAATGATTAAAGCAATTTATGAGACGTTGAAAATGAATGAATTTGAATCAGCATGGGCATTCATGGTTCAACGTTTTGGAGTTGGTGATCATGAATGGCTTTGTTCTTTATACGAAGATCGGAATTATTGGGCACCGGTATACTTGAAGGACACATTTTTTGCCGGAATGTCTGCAACACGACCTGGCGAAAGCTTTACTCCATTTTTTGATAAATTTGTGCACAAACAAACTCCTTTAAAGGAGTTTCTTGATAAGTATGAACTAGCTCTCCACAAGAAGCACAAGGAAGAGGCTCTTGCAGACATCGAGTCAAGAAGCTCAACACCCTTGCTGAAAACTAGATGTTCTTTTGAATTGCAGCTCTCTAGAATATACACTAGGCAAATGTTCATGAAGTTCCAATTTGAGGTGGAAGAAATGTATTCCTGTTTCGGCACAACACAGTTACACGTGGATGGTCCGGCCATAATCTACTTGGTCAAGGAGCGTGTCTTGTGTGAAGGAAATCGGCGCGAGATTAGGGACTTTGAAGTTCTGTACAGTAGGCCAGCAGGTGAAGTTCGCTGCATCTGTAGTTGCTTTAATTTTTACGGATACTTATGTCGGCACGCGTTGTGTGTGCTAAATTTCAATGGGGTGGAGGAGATACCTTCCAGATACATTCTTTCAAGGTGGAAGAAAGATTACAAGCGCCTTCATATTCCTGATCATAACACTGGTGTTGCTGATGATATAGACCATACTCAATTGTCTAATCAATTATTTAGAAGTGCCTTACAAGTTGTGGAGGAAGGAACAATTTCTTTGGACCATTACAATGTAGCTTTGCATGCTATTGAAGAATCACTAAATAAGGTTCATGATGTAGATTATAGGCAGATATAA 2085 0.4034 MDTQTDMMAEIGEHNSNNTTCHPPLNSMEETSFCCEQLPEGECIEIQKEEDGPLVELDCRNGFSEGRKQFVTPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHMRKETRTGCPAMIRMRLMDSQRWRILEVTLEHNHVLGAKIHKSVKKMGTGTKKKSLPSSNSEAHTVKLYRALVIDAGGNSNAISNAREDRTSSEFSNRLNLKKGDTQAIYNYLCRMQLTNPNFFYLMDFNDEGHLRNVFWADARSRAACGYFGDVIYFDNTYLLSKYEIPLVGFVGINHHGQSVLLGCGLLAGESLESYVWLFRAWIKSLSGFSPQTIITDKCKVLQSAIAEVFPGSLHRFGLPLIMKKVPEKLGGLRNYDMIRKEMIKAIYETLKMNEFESAWAFMVQRFGVGDHEWLCSLYEDRNYWAPVYLKDTFFAGMSATRPGESFTPFFDKFVHKQTPLKEFLDKYELALHKKHKEEALADIESRSSTPLLKTRCSFELQLSRIYTRQMFMKFQFEVEEMYSCFGTTQLHVDGPAIIYLVKERVLCEGNRREIRDFEVLYSRPAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPSRYILSRWKKDYKRLHIPDHNTGVADDIDHTQLSNQLFRSALQVVEEGTISLDHYNVALHAIEESLNKVHDVDYRQI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272069g00009 694 SMART 26again6 587 614 IPR006564 GO:0008270
Stsc272069g00009 694 Pfam SWIM zinc finger 584 608 IPR007527 GO:0008270
Stsc272069g00009 694 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 59 688 IPR031052 GO:0006355
Stsc272069g00009 694 Pfam MULE transposase domain 289 382 IPR018289 -
Stsc272069g00009 694 ProSiteProfiles Zinc finger SWIM-type profile. 576 612 IPR007527 GO:0008270
Stsc272069g00009 694 Pfam FAR1 DNA-binding domain 87 170 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272069g00009 Stsc-Chr272069 50144 53135 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc272069g00009 MULE 1.1e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272069g00009 - K17604 gmx:100796448 1147.11