Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272069g00004 ATGGGTAATGAAAATAAGTTACCATTGTTGGTGCTTTTGCTCCTCAATTGTTTCTTGTTTGTAGCACTTTCACAAACAGCTCCCAATGATGATGTTGAGGCCTTAAATTCTATAAAGGATTCTTTGCAAATCAATCTTCCCAGTTGGGTTGGTTCAGATCCTTGTAGTGGTTCATCATGGCAAGGAATCACATGCAAGAACTCACGTGTTGTTTCCATATCATTACCAGACACAGGTTTAAAAGGCCAACTTTCTCAAAGTATTGGATCATTCTCTGAATTAGAAACTCTGGATCTGTCTTACAATAAGGACCTAACAGGATCACTTCCAGCAGAAATTGGAAACTTGAAGAAGCTAAGAAAATTAGTTCTTGTGGGTTGTGGTTTTAATGGCAACATTCCTGATGAAATTGGATCTCTATCTCAGTTGGTTTTCTTATCCTTAAACTCCAACAAATTTGTTGGAAAAATTCCATCTTCAATTGGGAATCTATCAAACTTGGATTGGCTTGATTTAACAGATAATGAACTTGATGGACCAATCCCAGTATCCCCTGGTCTTGATATGCTCCTCAAAGCACATCACTTCCATCTTGGGAAGAATAAGCTCTCAGGAGAAGTTCCTTCCAAACTTTTTAGCTCAGGAATGGCTCTCTGGCATCTGATTCTTGATAACAATCAGCTAACCGGTGAGATTCCGGATTCAATTGGACTTGTTCAGAATCTAACTCTGATAAGATTTGAAAACAATACATTGAGAGGGTTTGTGCCTCAGAGCCTCAACAACCTCACCAATGTTGCAGACCTGATATTGTCCAACAATAAGCTGGAAGGTCCACTGCCAAATCTTACTGGAATGAGCTCCCTGAAATACTTGGATTTGAGCAGCAATGCCTTTAATAGAACAGATTTTCCAAAATGGCTTTTGAATCTGAAGAACTTAACAACATTACGGATGCAGAATTCGAGCCTGTCTGGCCAAATACCTGCTGATTTCTTTAGCCTTCCCTCTTTGCAAGATGTAGTGCTAAATGATAATGAACTTAATGGAACACTGAATCTTGGTCCCAACTATAGCAAAAAGTTGCAACTCATTGATTTGGATTCGAACTCGGTTGAGGAGTTTACACAGCAAAATCAACCACCTAATTTCATCATAGTGCTTGAAAATAACCCAATTTGTTACGAATTTGGAACAACCAAAACTTTCTGCAAACCACATCAGATCTCAGATGGAAAGCCACAAAACAAGTGTCCTCCAGCTTCTAGTTGCAGCTCTGATAAGAGTCTCAGTCCCATGTGTCACTGTGCATATCCGTACACTGGTACTGTAACTTACAGAGCACCTTCCCTTTATGAATGGAGAAACAACACTTCAATAGATGAAGATATCATGCAGGCTCTTCAATCCAGTTATCAGCAACAACTACCTGTGGAATCAGTAGTTTCAAGCATTCTAGATTCTGATCCATTTGAGTCTTTTGAATTTCTCATCAAAATCTTCCCATTGAATGAAGATAGTTTCAGCCAGAAAGACAATTATCTGATCAGTCTTGTGCTTGTCAATCTCAGTGCTAATAGACCATATGATTTTTCCCTTGACAACAAACTAGAGCCTAAGCAGTTGAGTAGCTCATCAAACACTGCAATGATGATTGGAGTGGCAGTTTGTGGTTCTTTGGTCCTTGTGCTGTTACTACTAGCAGGTGTTTATGCCTTGTGCCAGAAGCAAAGAGCCGAAAGAGCGATTTCTCGAAACAATCCTTTCGGAAACTGGGATCCAAGTAAAAGCAACTGTGGCACCCCTGAGATAAAGGCAACAAGGCAATTCTCTTTTAAAGAACTTAAGAAATACACAAACAACTTTTCACCAGCCAATGATGTTGGATCTGGGGGTTATGGAAAGGTTTATAAGGGAACTCTTCCCTCTGGACAATTGATAGCCATAAAAAGAGCTCAAAAGGAATCGAAGCAGGGCCGGTTAGAATTCAAAGCCGAGATTGAACTCCTTTCAAGGGTTCACCACAAGAATGTGGTAAGCCTAGTTGGATTCTGCTTTGAAGGAGAAGAACAGATGCTGGTTTATGAGTTTGTTCCTAATGGAACATTGAAGGATACTATCACAGGGAAATCAGGAATTAGATTTGGGTGGCATATAAGGATAAAAGTAGCCCTTGGTGCTGCAAGGGGTTTGGCTTATCTTCATGAACACGCCGATCCTCCAATCATACACAGGGACATCAAATCAAACAACATCTTGCTGGGTGAGAAGCTTGATGCAAAAGTTGCTGATTTTGGTCTCTCCAAACCAATGTTAGATTGTGACAAAGATCATGTCAGCACTCAAGTTAAAGGAACAATGGGATACTTGGATCCGGAATACTACACAAGTCAGCAAGTGACTGAGAAGAGTGATGTCTATAGCTTCGGAGTGCTGATGTTAGAGCTGATAACAGGAAGAAAGCCGATCGAACGAGGGAAATACATTGTGAAAGTGGTAAGAAACTCAATTGACAAGACTAAGGACTTGTATGGCCTCCATGAACTCATTGACCGAGCCATCTTTGAAGATGGCTCGGCGCTGAATGGTTTCGGGAAATTTGTTGATCTTGCAATGATGTGTGTTGAAGAATCAGGAGTTAACAGGCCTCCAATGAGTGATGTAGTGAAAGGAATTGAAATCATATTGCATTCTGCTGGTTTGGACCCTGCTGCTGAATCAGAACCTTCCACTTCTTCGAGTTTTCGACATAATGAGGTAAGCCTAGAGAGTTGCCATCAACCTTTCAGCAGTGAGTCCTTGTATTCAAGCTCAGAACATATTCAAGAAAACAAGGATCCAAGGTAA 2847 0.4057 MGNENKLPLLVLLLLNCFLFVALSQTAPNDDVEALNSIKDSLQINLPSWVGSDPCSGSSWQGITCKNSRVVSISLPDTGLKGQLSQSIGSFSELETLDLSYNKDLTGSLPAEIGNLKKLRKLVLVGCGFNGNIPDEIGSLSQLVFLSLNSNKFVGKIPSSIGNLSNLDWLDLTDNELDGPIPVSPGLDMLLKAHHFHLGKNKLSGEVPSKLFSSGMALWHLILDNNQLTGEIPDSIGLVQNLTLIRFENNTLRGFVPQSLNNLTNVADLILSNNKLEGPLPNLTGMSSLKYLDLSSNAFNRTDFPKWLLNLKNLTTLRMQNSSLSGQIPADFFSLPSLQDVVLNDNELNGTLNLGPNYSKKLQLIDLDSNSVEEFTQQNQPPNFIIVLENNPICYEFGTTKTFCKPHQISDGKPQNKCPPASSCSSDKSLSPMCHCAYPYTGTVTYRAPSLYEWRNNTSIDEDIMQALQSSYQQQLPVESVVSSILDSDPFESFEFLIKIFPLNEDSFSQKDNYLISLVLVNLSANRPYDFSLDNKLEPKQLSSSSNTAMMIGVAVCGSLVLVLLLLAGVYALCQKQRAERAISRNNPFGNWDPSKSNCGTPEIKATRQFSFKELKKYTNNFSPANDVGSGGYGKVYKGTLPSGQLIAIKRAQKESKQGRLEFKAEIELLSRVHHKNVVSLVGFCFEGEEQMLVYEFVPNGTLKDTITGKSGIRFGWHIRIKVALGAARGLAYLHEHADPPIIHRDIKSNNILLGEKLDAKVADFGLSKPMLDCDKDHVSTQVKGTMGYLDPEYYTSQQVTEKSDVYSFGVLMLELITGRKPIERGKYIVKVVRNSIDKTKDLYGLHELIDRAIFEDGSALNGFGKFVDLAMMCVEESGVNRPPMSDVVKGIEIILHSAGLDPAAESEPSTSSSFRHNEVSLESCHQPFSSESLYSSSEHIQENKDPR 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272069g00004 948 CDD STKc_IRAK 628 895 - -
Stsc272069g00004 948 PANTHER RECEPTOR-LIKE PROTEIN 55 38 893 - -
Stsc272069g00004 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Stsc272069g00004 948 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 698 908 - -
Stsc272069g00004 948 Gene3D Transferase(Phosphotransferase) domain 1 698 908 - -
Stsc272069g00004 948 MobiDBLite consensus disorder prediction 905 938 - -
Stsc272069g00004 948 SUPERFAMILY Protein kinase-like (PK-like) 608 934 IPR011009 -
Stsc272069g00004 948 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Stsc272069g00004 948 Gene3D Ribonuclease Inhibitor 187 281 IPR032675 -
Stsc272069g00004 948 MobiDBLite consensus disorder prediction 903 948 - -
Stsc272069g00004 948 FunFam Leucine-rich repeat protein kinase family protein 591 697 - -
Stsc272069g00004 948 Gene3D Ribonuclease Inhibitor 282 430 IPR032675 -
Stsc272069g00004 948 FunFam Leucine-rich repeat family protein 30 184 - -
Stsc272069g00004 948 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Stsc272069g00004 948 SMART serkin_6 622 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272069g00004 948 Gene3D Phosphorylase Kinase; domain 1 594 697 - -
Stsc272069g00004 948 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Stsc272069g00004 948 FunFam Leucine-rich repeat protein kinase family protein 185 282 - -
Stsc272069g00004 948 SUPERFAMILY L domain-like 64 394 - -
Stsc272069g00004 948 Pfam Protein tyrosine and serine/threonine kinase 626 825 IPR001245 GO:0004672|GO:0006468
Stsc272069g00004 948 ProSiteProfiles Protein kinase domain profile. 622 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272069g00004 Stsc-Chr272069 28078 32924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272069g00004 11 948 Receptor kinase-like Gene Family AT5G49760 49.739 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc272069g00004 PK_Tyr_Ser-Thr 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272069g00004 - - aip:107638778 1533.85