Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272069g00003 ATGGATAAAAGAGTTCTAATATTCCTACTACTCATTTTCAGTTCTTTGTTAGCCGTCGCAGCAAGAACAGCAAATCAAGACTACCAAACTCTGCTGGCTCTAAAGAACGAGTGGCAGAACACACCACCTGATTGGGATCGCTCGAATGATCCTTGTGGAGATCGTTGGGTTGGCATTGGGTGCATCAACGGAGCGGTTACCTCCATAACATTGGCAAGCATGAATTTGAGAGGCCAGCTTTCATCAGAAATTGGAAGACTATCTGAATTGCGAATTCTGGATCTCTCCTACAATAAGAATTTAACAGGACCACTTCCCATAGCAATTGGAAACTTGAGAAAGCTGACAAACTTAATTCTTGCTGACTGTGGTTTCAGTGGTGTTATACCAGATACAATTGGAAATCTGCAACGACTTGCATTCTTGTCTTTAAATTCAAATAACTTCAACGGGCAAATTCCAGCCACTATTGGCAATCTCACAAATTTATCATGGCTGGACTTGGCTGAAAACCAGCTTGAAGGGCCTATCCCAATATCAAATGGAACCTCTCCTGGTCTTGATATGCTACACCATACAAAGCACTTTCATTTTGGGGCTAACGAACTTTCAGGCAATATTCCTCCTCAGCTTTTTAGCTCAGACATGTCTCTGATACATGTGCTTTTTGAAGGTAACAAATTTACTGGTAATGTTCCATCTACACTTGGACTAGTCCAGAGTCTCGAGGTTCTGCGCCTTGATGGTAATTTTCTAAGTGGATTGGTGCCTGCGAATATTAGCAACCTTAAAAATCTTAGGGATTTGCTCCTCTCCAACAATCGCCTATCTGGTCCCCTTCCCAACCTTTCTGGAATGAACATCCTCAACTTCCTGGATGTGAGCAATAATAGTTTTGATCCATCAGAGTTTCCACTATGGTTGACAAACCTATCATCTTTGACAACACTTGCTATGGAGAATATACAACTTCAAGGGAATATTCCTGTTTCATTTTTCAGTTTGAGTCAGTTACAGACAGTGAATCTGAAAGACAACCAGCTAAATGGAACATTAGATATTGGCACTACCATCAGCAACCAACTGGAAATCGTTGATTTGCAGACCAACTATATTGATAAGTTTAATCCCGAAATTAATGTATCGAAAGTGGAAATAAGACTTGTCGATAATCCGGTTTGTGGAGGAGGAGCTTTACAGGATTATTGTTCCATTCCACAACAAAACAACCTTTATACAACACCACTGAACAATTGTGTACCTGTTACCTGCAGCACAGATCAGAAACAAAGCCCTAACTGCAAATGTGCATATCCATATACAGGAACTCTAACTTTCAGGGCACCAAGCTTCTCTGACTTGCAAAACCAGTCAGTCTTTGCATTGCTGGAGTCATCTATGATGCGGACTTTTCATCAAAATAATCTACCTGTGGACACAGTTTCTGTGAGCAATCCAAGAAAGGTAGAATTGTACCTTGATTTGAGTCTAGAAGTGTTTCCATCTGGCCAAGATCGTTTCAACCGAACAGGGATTATCAATATAGGCTTTGTGCTTAGCAACCAGTCATATAAGCCTCCTGCACCTTTTGGACCATTTATTTTTCTTGCTGATAATTATGAAAACTATATGGATGACTCAGTATTAATCAGCTCTGGAGGATCCAAGAAATCTTCAAATACTGGAATAATAGCCGGAGTTGCTGGGGGTATTGTCCTGGTGATATTATTAATCATTGCAGGTGTTTATGTCTTGTACCAAAAGAATAAGGCGAAAAGAGCAAAAGAGAAAAACAATCCTTTTGCAAAATGGGAAGAAGATGCGAGCAATACTAGTATTCCGCAGCTAAAAGGAGCAAGGCACTTCACTTTTGAAGAAATTCAGAACTACACCAAAAACTTCTCACAAGCCAATGGTATTGGATCTGGAGGATATGGGAAGGTTTATCGAGGTACTCTTCAAAATGGGCAACTTATTGCTGTTAAAAGGGCTCAGAAGGAATCAATGCAGGGAGGGCTGGAATTCAAGACTGAGATTGAAATGCTATCAAGGGTCCACCATAAGAATCTTGTTAGCCTTATAGGTTTCTGCTTTGAGCAAGGAGAACAAATGCTAATTTATGAATATGTTCCTAATGGCACTTTGAAGGATACTCTTTCAGGTAAATCAGGAATAAGATTGGATTGGATTAGAAGGCTAAAAATTGCACTTGGTGCTGCCAGGGGGCTGGATTATCTCCATGAACATGCCGATCCTCCTATCGTACATAGGGACATCAAATCCACAAACATATTATTGGATGAACGCTTGAATGCAAAAGTTTCTGATTTTGGACTCTCCAAACCATTGGGAGATGGCGAAAAAGGCTACGTTACCACTCAAGTCAAAGGGACAATGGGCTACTTGGACCCGGAGTACTATATGACTCAACAATTGACAGAAAAGAGTGACGTGTATAGTTTCGGAGTACTAATGTTGGAACTGATCACAGCAAGAATGCCAATAGAACGAGGAAAATACATTGTGAAAGTGGTTAAGAATGCCATAGACAAGGACAAAGAGTTCTATGGCCTTAAGGAAGTCCTTGACCCATCCCTTGATTTGGGAACAACACCACAGGGTTTTGACAAGTTTGTTGATGTTGCAATGCAATGTGTTGATGAGTCAAGTTCTAGCAGACCTTCAATGAACTTTGTGGTGAAAGAGATTGAGAAGATGTTGCAGTTGGCTGGTTCAAACCCCAATGCAGAGTCTGCGTCGACTTCATCCAGTTATGAAGTAAGCAAAGGGAGTTCTCAACATCCTTACAACAATGAGTTGTTTGATTCAAGTGTGGTGATTCCACGTCCTTAA 2853 0.4073 MDKRVLIFLLLIFSSLLAVAARTANQDYQTLLALKNEWQNTPPDWDRSNDPCGDRWVGIGCINGAVTSITLASMNLRGQLSSEIGRLSELRILDLSYNKNLTGPLPIAIGNLRKLTNLILADCGFSGVIPDTIGNLQRLAFLSLNSNNFNGQIPATIGNLTNLSWLDLAENQLEGPIPISNGTSPGLDMLHHTKHFHFGANELSGNIPPQLFSSDMSLIHVLFEGNKFTGNVPSTLGLVQSLEVLRLDGNFLSGLVPANISNLKNLRDLLLSNNRLSGPLPNLSGMNILNFLDVSNNSFDPSEFPLWLTNLSSLTTLAMENIQLQGNIPVSFFSLSQLQTVNLKDNQLNGTLDIGTTISNQLEIVDLQTNYIDKFNPEINVSKVEIRLVDNPVCGGGALQDYCSIPQQNNLYTTPLNNCVPVTCSTDQKQSPNCKCAYPYTGTLTFRAPSFSDLQNQSVFALLESSMMRTFHQNNLPVDTVSVSNPRKVELYLDLSLEVFPSGQDRFNRTGIINIGFVLSNQSYKPPAPFGPFIFLADNYENYMDDSVLISSGGSKKSSNTGIIAGVAGGIVLVILLIIAGVYVLYQKNKAKRAKEKNNPFAKWEEDASNTSIPQLKGARHFTFEEIQNYTKNFSQANGIGSGGYGKVYRGTLQNGQLIAVKRAQKESMQGGLEFKTEIEMLSRVHHKNLVSLIGFCFEQGEQMLIYEYVPNGTLKDTLSGKSGIRLDWIRRLKIALGAARGLDYLHEHADPPIVHRDIKSTNILLDERLNAKVSDFGLSKPLGDGEKGYVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARMPIERGKYIVKVVKNAIDKDKEFYGLKEVLDPSLDLGTTPQGFDKFVDVAMQCVDESSSSRPSMNFVVKEIEKMLQLAGSNPNAESASTSSSYEVSKGSSQHPYNNELFDSSVVIPRP 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272069g00003 950 MobiDBLite consensus disorder prediction 911 940 - -
Stsc272069g00003 950 SUPERFAMILY Protein kinase-like (PK-like) 620 926 IPR011009 -
Stsc272069g00003 950 SUPERFAMILY L domain-like 49 426 - -
Stsc272069g00003 950 MobiDBLite consensus disorder prediction 911 950 - -
Stsc272069g00003 950 Pfam Leucine rich repeat 113 173 IPR001611 GO:0005515
Stsc272069g00003 950 ProSiteProfiles Leucine-rich repeat profile. 265 287 IPR001611 GO:0005515
Stsc272069g00003 950 Gene3D Phosphorylase Kinase; domain 1 604 709 - -
Stsc272069g00003 950 Gene3D Transferase(Phosphotransferase) domain 1 710 929 - -
Stsc272069g00003 950 FunFam Leucine-rich repeat protein kinase family protein 597 709 - -
Stsc272069g00003 950 Gene3D Ribonuclease Inhibitor 286 404 IPR032675 -
Stsc272069g00003 950 Pfam Protein tyrosine and serine/threonine kinase 638 902 IPR001245 GO:0004672|GO:0006468
Stsc272069g00003 950 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Stsc272069g00003 950 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Stsc272069g00003 950 ProSiteProfiles Protein kinase domain profile. 634 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272069g00003 950 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 710 919 - -
Stsc272069g00003 950 CDD STKc_IRAK 640 906 - -
Stsc272069g00003 950 ProSitePatterns Protein kinases ATP-binding region signature. 640 662 IPR017441 GO:0005524
Stsc272069g00003 950 PANTHER RECEPTOR-LIKE PROTEIN 55 35 906 - -
Stsc272069g00003 950 SMART serkin_6 634 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272069g00003 950 Gene3D Ribonuclease Inhibitor 182 285 IPR032675 -
Stsc272069g00003 950 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Stsc272069g00003 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Stsc272069g00003 950 FunFam Leucine-rich repeat family protein 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272069g00003 Stsc-Chr272069 19798 25923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272069g00003 7 948 Receptor kinase-like Gene Family AT5G49760 56.962 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc272069g00003 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272069g00003 - - aip:107638780 1607.42