Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272068g00003 ATGGACGGAATCTATGGTATTCTGAAACTTAGGATCAAGAGAGGCATTGATCTCGCAGTTCGTGATTTGCTTTCTAGCGACCCTTACGTTGTTGTCACCATGGGTTCTCAGAAACTGAAAACTAAGATCATATATAAAAATACCAATCCTGAGTGGAATGAAGAATTGACCCTTATGGTTGAAGATATTAAAACTCCAATACGTCTGAGAGTTTTCGACAAAGATACGTTCACACCAGATGATGAAATGGGTGAAGCAATTATTGATATAAAACCATATGTTGAGTGTTGGAAGATGGAATTAGAGAAGCTCCCAGAAGGTTCTGTGGTGGAAATAATTCAGCCAAATGAATATAACTACCTTGCAGAAGATAATATAAAATTAAAAGCTACACCAAATACAGAAATAAAGATTCCCCACACAGACACAGCGCTAAAGACTCAACAGTCAACACACACTACCTCTCGACATTTGTTTCCTCCCCTCCGTCTCTCTCAACTTCGGGCGGTGACACCACCACCACCACCACCGGAGATGGCGGGGCCAGACAACTGCTGTTCATGCTGCTTCAGCTTCATAGTAACCATGGGCCTCACTGCCCTCTTCATCTGGCTCTCCCTCCGCGTTGACCAACCAAAGTTCTACCTCGAGTCAATTTACGTTCCTGCCCTCAACAAATCCCTCCCCTCAACCAAAAACGACACCGTTTTATTCTCAATCAAGTTCACGAACCCTAACAAAGACAAAGGGATCAAATACGACGCCGTTCGCGTCAACTTCTCCCTCTTCCTCTCCCCAAATTCCACGCGCCTACTCTCCAACTCCACCGCCGTAGATCCCTTCTACCAAGGCCACCAGAAGAAGGCGCATAAGCCTAGCTCTGCCTCATTCGTCGGAAACCTCACGCCGCCGGCGGTGTTGGACGGGAAGGTGTATTTCCGTGTGGATTTTGCGACGGCGGTGAAGTACAAGATCTTGTTTTTTTACACGAAGCGATACGGTATGTGGGGAGGGGCAAATGTGGAAATTAATGATAGGGGTGTGAAGGTGTATCCGAAACCGGTGAGGCTTGGCAACGAGCCGCCGAGGATCGTGAGCGGCGTACCGCAGCTCCGTGGAGGTGGAGGCTATCGTGCGCTTCTTCCGCTCTTCGTAGCTGCGTGGATAATGCGCACTCGTTGA 1182 0.4788 MDGIYGILKLRIKRGIDLAVRDLLSSDPYVVVTMGSQKLKTKIIYKNTNPEWNEELTLMVEDIKTPIRLRVFDKDTFTPDDEMGEAIIDIKPYVECWKMELEKLPEGSVVEIIQPNEYNYLAEDNIKLKATPNTEIKIPHTDTALKTQQSTHTTSRHLFPPLRLSQLRAVTPPPPPPEMAGPDNCCSCCFSFIVTMGLTALFIWLSLRVDQPKFYLESIYVPALNKSLPSTKNDTVLFSIKFTNPNKDKGIKYDAVRVNFSLFLSPNSTRLLSNSTAVDPFYQGHQKKAHKPSSASFVGNLTPPAVLDGKVYFRVDFATAVKYKILFFYTKRYGMWGGANVEINDRGVKVYPKPVRLGNEPPRIVSGVPQLRGGGGYRALLPLFVAAWIMRTR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272068g00003 393 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 100 IPR035892 -
Stsc272068g00003 393 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Stsc272068g00003 393 Pfam C2 domain 6 92 IPR000008 -
Stsc272068g00003 393 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 126 IPR044562 -
Stsc272068g00003 393 SMART C2_3c 7 102 IPR000008 -
Stsc272068g00003 393 Gene3D C2 domain 5 157 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272068g00003 Stsc-Chr272068 29052 31914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272068g00003 6 94 C2H2 Transcription Factor Family AT4G05330 53.933 7.72e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272068g00003 - - vun:114183543 232.646