Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272067g00001 ATGGAAGAAGAAGATTATAATCAAGAACAGAACATCAACAAGAAGAACAAGCATGTCTGCAAGTTCTGCAGCAGAAGCTTCCCTTGTGGTAGATCCTTGGGTGGTCACATGAGGTCTCATGTCATCAATGGTGACATAGATCATCACCATTACAATAACAAGTTTCTTGCATCATCATCATCAACAACAGCAGAAAAAATTAAGAAGATGCTTTCATCTTCTTCATCCATAGAAAACAACAACACAGGAATAGGTTCTGAAGGTTATGGTCTGAGAGAGAATCCCAAGAAGACATGGAGGCTCACTGATTCAACAAGTGAAGACACTTCTTTGCTGTTCTGCAAAGATTGTGGTAAAGGTTTTCAGTCATGGAGAGCACTATTTGGCCACATGAAGTGCCATTCTTCTGAGAAAGTAGAGAGCATGGAGTGTGATCAAGATTCGTCATGGACTAACAATAGTGCCAGCCATTCTGATAATGAAGAAGCCAATGCTCCAAGCAGAAGGAGAAGATCCAAGAGAACAAGAACAAGGTACATAGCACCAGCAGCAACAACTGATTCTTCTGTTTCTGAGGCTGATGAGCATGAACAAGAAGAAGTTGCTATGAGCTTGATGATGCTTAGCAGGGATTTGAGTCCATGGTGTGGTGTCAATTCTGTTTCTGAGTCCTCTAAGATTGACATCCACAAGAAGAACAAGAACAAGAAGCTTGTCAATATTGGTTCTGAGTTTGCAAAATTAGGCAGCTATTTGAGTTCTTCAAATCTAAGCTTCAAAGGGAAGAAAAGTTCAGAATTTTTTGCTACTGAGAGTTCCAAAGGAGTTAAGCTGATGAACAACAGCACAGTTTCAGTTAATGGTTTCAGCAAGATTATTGGGAAGGATAAGAAAAAGTGTGACCTTGATTCTGAGTCTTGTGCATTTGAAGGTACTACTAACAATAAGTACAGCTCAATGAAGGCAAAGTTTTGGGATTCTGGATCAACAAAGTCTAATTGGGTGAGCAAAAAGCCTAATTCAGATGCTGAATTCAGCATCAAGAGCACTACTCATAATCATAAGAGAGGAAAATTTGAGTGTACAACCTGCAACAAGATCTTCCATTCATACCAAGCTCTTGGGGGTCACAGAGCAAGTCACAAGAAGATCAAAGGCTGCTCTTTTGCTTCAAGGAACAATGATCTGAGCAGTGAAAACAGCATTGAATTTGAAGGTGAAGCAGAACATGAAGAAGCACCACCACCACCACCACCATCACCCACCCCCACTGACACGAAGACCTGTGAATATGCAGCACAACAAGTACATGAATTTGGTAATGGTTTTGAGAGAGAATCCAAGAAGGGAACCAACAAGCAGGGGCATGAGTGTCCAATTTGCTTAAAGGTATTTTCATCTGGTCAGGCATTGGGTGGACACAAGAGGTCCCATATGGCTTCTGCTTCTGCTTCTGAGAGTGGGAACTTTCGTCAAACAGTTGTACTTGAAGAATCTTCAGTGCCTGAGATTAGGGACTTGCTTGATCTCAATCTTCCTGTTGCTGAGGAGGATGATCATGATCATGATGAAGAAGAAATCAATGGCCATGCCTCTGATTCATACACAACATGGTGGGAAAATCACAAGCAGGAGGCATTGGTAGGTCTCATGTCTAACTAG 1662 0.4152 MEEEDYNQEQNINKKNKHVCKFCSRSFPCGRSLGGHMRSHVINGDIDHHHYNNKFLASSSSTTAEKIKKMLSSSSSIENNNTGIGSEGYGLRENPKKTWRLTDSTSEDTSLLFCKDCGKGFQSWRALFGHMKCHSSEKVESMECDQDSSWTNNSASHSDNEEANAPSRRRRSKRTRTRYIAPAATTDSSVSEADEHEQEEVAMSLMMLSRDLSPWCGVNSVSESSKIDIHKKNKNKKLVNIGSEFAKLGSYLSSSNLSFKGKKSSEFFATESSKGVKLMNNSTVSVNGFSKIIGKDKKKCDLDSESCAFEGTTNNKYSSMKAKFWDSGSTKSNWVSKKPNSDAEFSIKSTTHNHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCSFASRNNDLSSENSIEFEGEAEHEEAPPPPPPSPTPTDTKTCEYAAQQVHEFGNGFERESKKGTNKQGHECPICLKVFSSGQALGGHKRSHMASASASESGNFRQTVVLEESSVPEIRDLLDLNLPVAEEDDHDHDEEEINGHASDSYTTWWENHKQEALVGLMSN 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272067g00001 553 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 40 IPR013087 -
Stsc272067g00001 553 ProSiteProfiles Zinc finger C2H2 type domain profile. 456 483 IPR013087 -
Stsc272067g00001 553 ProSiteProfiles Zinc finger C2H2 type domain profile. 359 386 IPR013087 -
Stsc272067g00001 553 Pfam C2H2-type zinc finger 456 480 - -
Stsc272067g00001 553 Pfam C2H2-type zinc finger 359 383 - -
Stsc272067g00001 553 Pfam C2H2-type zinc finger 114 136 - -
Stsc272067g00001 553 Pfam C2H2-type zinc finger 18 40 - -
Stsc272067g00001 553 MobiDBLite consensus disorder prediction 144 196 - -
Stsc272067g00001 553 SUPERFAMILY beta-beta-alpha zinc fingers 15 41 IPR036236 -
Stsc272067g00001 553 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Stsc272067g00001 553 SUPERFAMILY beta-beta-alpha zinc fingers 112 139 IPR036236 -
Stsc272067g00001 553 ProSitePatterns Zinc finger C2H2 type domain signature. 458 478 IPR013087 -
Stsc272067g00001 553 Gene3D Classic Zinc Finger 356 478 - -
Stsc272067g00001 553 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Stsc272067g00001 553 MobiDBLite consensus disorder prediction 145 161 - -
Stsc272067g00001 553 MobiDBLite consensus disorder prediction 402 427 - -
Stsc272067g00001 553 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Stsc272067g00001 553 SUPERFAMILY beta-beta-alpha zinc fingers 359 478 IPR036236 -
Stsc272067g00001 553 SMART c2h2final6 456 478 IPR013087 -
Stsc272067g00001 553 SMART c2h2final6 112 134 IPR013087 -
Stsc272067g00001 553 SMART c2h2final6 359 381 IPR013087 -
Stsc272067g00001 553 SMART c2h2final6 18 40 IPR013087 -
Stsc272067g00001 553 ProSitePatterns Zinc finger C2H2 type domain signature. 361 381 IPR013087 -
Stsc272067g00001 553 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 10 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272067g00001 Stsc-Chr272067 1724 3457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272067g00001 356 519 C2H2 Transcription Factor Family AT2G45120 39.024 4.51e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272067g00001 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272067g00001 - - adu:107463637 875.544